Wall clock time and date at job start Mon Mar 30 2020 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3 6 6 C 1.39868 * 126.04052 * 79.69351 * 5 2 1 7 7 N 1.30832 * 108.20191 * 179.81969 * 6 5 2 8 8 N 1.40086 * 108.20688 * 0.43458 * 7 6 5 9 9 C 1.46502 * 126.03615 * 179.70172 * 8 7 6 10 10 H 1.08996 * 109.47225 * 25.02013 * 9 8 7 11 11 C 1.52993 * 109.46781 * 145.02543 * 9 8 7 12 12 C 1.53000 * 109.46741 * 265.02541 * 9 8 7 13 13 C 1.50705 * 109.47066 * 175.00445 * 12 9 8 14 14 H 1.08003 * 119.99637 * 359.97438 * 13 12 9 15 15 C 1.37874 * 119.99993 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00337 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47259 * 119.99813 * 17 15 13 20 20 H 1.48500 * 109.47099 * 240.00180 * 17 15 13 21 21 C 1.34942 * 107.92470 * 359.72075 * 8 7 6 22 22 H 1.09002 * 109.47018 * 299.99687 * 1 2 3 23 23 H 1.08999 * 109.47836 * 59.99714 * 1 2 3 24 24 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00309 * 296.04346 * 4 2 1 26 26 H 1.00902 * 110.99923 * 60.00509 * 4 2 1 27 27 H 1.08010 * 125.89527 * 359.97438 * 6 5 2 28 28 H 1.08999 * 109.47732 * 60.00264 * 11 9 8 29 29 H 1.09008 * 109.47236 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.47538 * 299.99373 * 11 9 8 31 31 H 1.09004 * 109.47238 * 294.99962 * 12 9 8 32 32 H 1.08990 * 109.47514 * 55.00186 * 12 9 8 33 33 H 0.97002 * 120.00655 * 179.97438 * 16 15 13 34 34 H 1.07991 * 126.13030 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 2.1159 -2.0957 1.4043 7 7 2.6023 -2.3294 2.5962 8 7 2.8347 -1.0984 3.2231 9 6 3.3710 -0.9063 4.5729 10 1 3.9645 -1.7758 4.8552 11 6 4.2531 0.3435 4.5979 12 6 2.2155 -0.7350 5.5610 13 6 2.7611 -0.6602 6.9638 14 1 3.8255 -0.7285 7.1335 15 6 1.9015 -0.5046 8.0305 16 7 0.6054 -0.4210 7.8238 17 14 2.5777 -0.4126 9.7694 18 1 4.0575 -0.5315 9.7319 19 1 2.2005 0.8877 10.3791 20 1 2.0129 -1.5217 10.5794 21 6 2.4769 -0.1209 2.3644 22 1 -0.3633 0.5138 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7502 -1.6648 -1.1910 26 1 1.6961 -0.2349 -2.0386 27 1 1.8307 -2.8434 0.6789 28 1 3.6595 1.2130 4.3157 29 1 4.6518 0.4868 5.6023 30 1 5.0763 0.2214 3.8940 31 1 1.6747 0.1834 5.3321 32 1 1.5385 -1.5852 5.4794 33 1 0.0006 -0.3119 8.5742 34 1 2.5353 0.9415 2.5489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695894260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:32 Heat of formation + Delta-G solvation = 57.901645 kcal Electronic energy + Delta-G solvation = -15111.163980 eV Core-core repulsion = 12659.021285 eV Total energy + Delta-G solvation = -2452.142695 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77495 -36.25238 -34.90816 -32.47232 -29.88975 -29.25296 -28.00902 -27.09505 -24.08583 -22.54091 -21.69369 -19.50463 -19.17689 -16.80287 -16.25761 -15.33595 -14.84912 -14.37092 -14.10515 -14.03147 -13.35962 -13.17511 -13.01384 -12.40126 -12.31117 -11.99226 -11.60121 -11.53970 -11.31411 -11.04032 -10.91754 -10.61363 -10.20899 -9.96193 -9.86912 -9.31267 -8.79794 -8.67284 -8.49041 -7.78696 -6.12772 -4.17449 2.51103 3.15984 3.24349 3.24805 3.32849 3.36108 4.36522 4.71800 4.95704 5.23421 5.27831 5.33829 5.39148 5.47512 5.61660 5.75521 5.86328 5.90264 5.98453 6.15645 6.25381 6.44588 6.54075 6.62211 6.68437 7.12512 7.20795 7.43567 7.49536 7.51913 7.66558 7.87419 8.19916 8.32144 8.87612 9.47289 10.98545 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.049190 B = 0.005814 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.085165 B = 4814.500221 C = 4995.420158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.171 3.829 3 H 0.079 0.921 4 N -0.841 5.841 5 C -0.248 4.248 6 C 0.041 3.959 7 N -0.299 5.299 8 N -0.342 5.342 9 C 0.152 3.848 10 H 0.091 0.909 11 C -0.148 4.148 12 C 0.020 3.980 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.067 3.933 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.338 0.662 26 H 0.336 0.664 27 H 0.168 0.832 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 2.100 -13.434 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.059 3.941 3 H 0.097 0.903 4 N -0.370 5.370 5 C -0.261 4.261 6 C -0.144 4.144 7 N -0.120 5.120 8 N -0.122 5.122 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.206 4.206 12 C -0.018 4.018 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.083 4.083 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.185 0.815 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.779 1.411 -12.070 12.466 hybrid contribution -1.182 0.524 0.252 1.318 sum 1.596 1.936 -11.817 12.081 Atomic orbital electron populations 1.22624 0.97715 1.01967 1.01737 1.19474 0.91077 0.96688 0.86859 0.90292 1.58887 1.67556 1.06723 1.03798 1.19678 1.15816 0.93407 0.97173 1.23364 1.00812 0.95423 0.94793 1.77314 1.21719 1.04824 1.08166 1.49244 1.46773 1.02844 1.13361 1.21826 0.97583 0.99087 0.76281 0.89078 1.22067 0.98461 0.96713 1.03380 1.19492 0.91964 0.98109 0.92276 1.21070 0.93458 1.51079 0.90493 0.92046 1.25001 0.94777 0.94963 0.99421 1.69979 1.02107 1.49335 1.31461 0.86471 0.79217 0.77697 0.84262 1.19563 1.20910 1.20899 1.22115 0.99868 0.95801 0.90505 0.91899 0.93203 0.92752 0.84949 0.85218 0.81461 0.92442 0.89226 0.93648 0.95971 0.95697 0.92812 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.46 37.15 0.35 -1.65 16 2 C 0.17 2.08 3.81 -68.86 -0.26 1.82 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 N -0.84 -8.90 9.19 -5.65 -0.05 -8.95 16 5 C -0.25 -3.90 5.09 -105.05 -0.53 -4.43 16 6 C 0.04 0.69 11.35 -17.37 -0.20 0.50 16 7 N -0.30 -6.07 12.58 30.63 0.39 -5.68 16 8 N -0.34 -6.83 3.53 -54.87 -0.19 -7.02 16 9 C 0.15 3.17 3.35 -67.93 -0.23 2.94 16 10 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 11 C -0.15 -2.59 8.64 37.15 0.32 -2.27 16 12 C 0.02 0.50 4.77 -27.88 -0.13 0.36 16 13 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 14 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.15 10.50 -17.22 -0.18 0.97 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.34 3.31 8.05 -39.29 -0.32 2.99 16 26 H 0.34 2.78 9.04 -39.29 -0.36 2.43 16 27 H 0.17 2.24 7.60 -52.48 -0.40 1.84 16 28 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 29 H 0.09 1.60 6.95 -51.92 -0.36 1.24 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.16 2.44 7.26 -52.49 -0.38 2.06 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -30.80 286.82 -6.14 -36.94 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.07 Total: 4.46 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.25 Total: -14.51 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.88 Total: -47.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.80 -6.14 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.844 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds