Wall clock time and date at job start Mon Mar 30 2020 02:34:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09002 * 109.47331 * 2 1
4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3
5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3
6 6 C 1.39868 * 126.04052 * 79.69351 * 5 2 1
7 7 N 1.30832 * 108.20191 * 179.81969 * 6 5 2
8 8 N 1.40086 * 108.20688 * 0.43458 * 7 6 5
9 9 C 1.46502 * 126.03615 * 179.70172 * 8 7 6
10 10 H 1.08996 * 109.47225 * 25.02013 * 9 8 7
11 11 C 1.52993 * 109.46781 * 145.02543 * 9 8 7
12 12 C 1.53000 * 109.46741 * 265.02541 * 9 8 7
13 13 C 1.50705 * 109.47066 * 175.00445 * 12 9 8
14 14 H 1.08003 * 119.99637 * 359.97438 * 13 12 9
15 15 C 1.37874 * 119.99993 * 179.97438 * 13 12 9
16 16 N 1.31508 * 120.00337 * 359.97438 * 15 13 12
17 17 Si 1.86802 * 119.99912 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.46955 * 359.97438 * 17 15 13
19 19 H 1.48490 * 109.47259 * 119.99813 * 17 15 13
20 20 H 1.48500 * 109.47099 * 240.00180 * 17 15 13
21 21 C 1.34942 * 107.92470 * 359.72075 * 8 7 6
22 22 H 1.09002 * 109.47018 * 299.99687 * 1 2 3
23 23 H 1.08999 * 109.47836 * 59.99714 * 1 2 3
24 24 H 1.09002 * 109.47331 * 179.97438 * 1 2 3
25 25 H 1.00896 * 111.00309 * 296.04346 * 4 2 1
26 26 H 1.00902 * 110.99923 * 60.00509 * 4 2 1
27 27 H 1.08010 * 125.89527 * 359.97438 * 6 5 2
28 28 H 1.08999 * 109.47732 * 60.00264 * 11 9 8
29 29 H 1.09008 * 109.47236 * 179.97438 * 11 9 8
30 30 H 1.09000 * 109.47538 * 299.99373 * 11 9 8
31 31 H 1.09004 * 109.47238 * 294.99962 * 12 9 8
32 32 H 1.08990 * 109.47514 * 55.00186 * 12 9 8
33 33 H 0.97002 * 120.00655 * 179.97438 * 16 15 13
34 34 H 1.07991 * 126.13030 * 180.02562 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6925 -1.1995
5 6 2.0323 -0.7104 1.2304
6 6 2.1159 -2.0957 1.4043
7 7 2.6023 -2.3294 2.5962
8 7 2.8347 -1.0984 3.2231
9 6 3.3710 -0.9063 4.5729
10 1 3.9645 -1.7758 4.8552
11 6 4.2531 0.3435 4.5979
12 6 2.2155 -0.7350 5.5610
13 6 2.7611 -0.6602 6.9638
14 1 3.8255 -0.7285 7.1335
15 6 1.9015 -0.5046 8.0305
16 7 0.6054 -0.4210 7.8238
17 14 2.5777 -0.4126 9.7694
18 1 4.0575 -0.5315 9.7319
19 1 2.2005 0.8877 10.3791
20 1 2.0129 -1.5217 10.5794
21 6 2.4769 -0.1209 2.3644
22 1 -0.3633 0.5138 0.8900
23 1 -0.3635 0.5138 -0.8899
24 1 -0.3634 -1.0277 -0.0005
25 1 1.7502 -1.6648 -1.1910
26 1 1.6961 -0.2349 -2.0386
27 1 1.8307 -2.8434 0.6789
28 1 3.6595 1.2130 4.3157
29 1 4.6518 0.4868 5.6023
30 1 5.0763 0.2214 3.8940
31 1 1.6747 0.1834 5.3321
32 1 1.5385 -1.5852 5.4794
33 1 0.0006 -0.3119 8.5742
34 1 2.5353 0.9415 2.5489
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695894260.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:34:32
Heat of formation + Delta-G solvation = 57.901645 kcal
Electronic energy + Delta-G solvation = -15111.163980 eV
Core-core repulsion = 12659.021285 eV
Total energy + Delta-G solvation = -2452.142695 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.138 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.77495 -36.25238 -34.90816 -32.47232 -29.88975 -29.25296 -28.00902 -27.09505
-24.08583 -22.54091 -21.69369 -19.50463 -19.17689 -16.80287 -16.25761 -15.33595
-14.84912 -14.37092 -14.10515 -14.03147 -13.35962 -13.17511 -13.01384 -12.40126
-12.31117 -11.99226 -11.60121 -11.53970 -11.31411 -11.04032 -10.91754 -10.61363
-10.20899 -9.96193 -9.86912 -9.31267 -8.79794 -8.67284 -8.49041 -7.78696
-6.12772 -4.17449 2.51103 3.15984 3.24349 3.24805 3.32849 3.36108
4.36522 4.71800 4.95704 5.23421 5.27831 5.33829 5.39148 5.47512
5.61660 5.75521 5.86328 5.90264 5.98453 6.15645 6.25381 6.44588
6.54075 6.62211 6.68437 7.12512 7.20795 7.43567 7.49536 7.51913
7.66558 7.87419 8.19916 8.32144 8.87612 9.47289 10.98545
Molecular weight = 223.14amu
Principal moments of inertia in cm(-1)
A = 0.049190 B = 0.005814 C = 0.005604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 569.085165 B = 4814.500221 C = 4995.420158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.171 3.829
3 H 0.079 0.921
4 N -0.841 5.841
5 C -0.248 4.248
6 C 0.041 3.959
7 N -0.299 5.299
8 N -0.342 5.342
9 C 0.152 3.848
10 H 0.091 0.909
11 C -0.148 4.148
12 C 0.020 3.980
13 C -0.522 4.522
14 H 0.061 0.939
15 C 0.061 3.939
16 N -0.890 5.890
17 Si 0.896 3.104
18 H -0.271 1.271
19 H -0.283 1.283
20 H -0.283 1.283
21 C 0.067 3.933
22 H 0.062 0.938
23 H 0.049 0.951
24 H 0.053 0.947
25 H 0.338 0.662
26 H 0.336 0.664
27 H 0.168 0.832
28 H 0.057 0.943
29 H 0.089 0.911
30 H 0.044 0.956
31 H 0.022 0.978
32 H 0.025 0.975
33 H 0.262 0.738
34 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.781 2.100 -13.434 13.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.059 3.941
3 H 0.097 0.903
4 N -0.370 5.370
5 C -0.261 4.261
6 C -0.144 4.144
7 N -0.120 5.120
8 N -0.122 5.122
9 C 0.052 3.948
10 H 0.109 0.891
11 C -0.206 4.206
12 C -0.018 4.018
13 C -0.561 4.561
14 H 0.080 0.920
15 C -0.142 4.142
16 N -0.529 5.529
17 Si 0.724 3.276
18 H -0.196 1.196
19 H -0.209 1.209
20 H -0.209 1.209
21 C -0.083 4.083
22 H 0.081 0.919
23 H 0.068 0.932
24 H 0.072 0.928
25 H 0.151 0.849
26 H 0.148 0.852
27 H 0.185 0.815
28 H 0.076 0.924
29 H 0.108 0.892
30 H 0.064 0.936
31 H 0.040 0.960
32 H 0.043 0.957
33 H 0.072 0.928
34 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 2.779 1.411 -12.070 12.466
hybrid contribution -1.182 0.524 0.252 1.318
sum 1.596 1.936 -11.817 12.081
Atomic orbital electron populations
1.22624 0.97715 1.01967 1.01737 1.19474 0.91077 0.96688 0.86859
0.90292 1.58887 1.67556 1.06723 1.03798 1.19678 1.15816 0.93407
0.97173 1.23364 1.00812 0.95423 0.94793 1.77314 1.21719 1.04824
1.08166 1.49244 1.46773 1.02844 1.13361 1.21826 0.97583 0.99087
0.76281 0.89078 1.22067 0.98461 0.96713 1.03380 1.19492 0.91964
0.98109 0.92276 1.21070 0.93458 1.51079 0.90493 0.92046 1.25001
0.94777 0.94963 0.99421 1.69979 1.02107 1.49335 1.31461 0.86471
0.79217 0.77697 0.84262 1.19563 1.20910 1.20899 1.22115 0.99868
0.95801 0.90505 0.91899 0.93203 0.92752 0.84949 0.85218 0.81461
0.92442 0.89226 0.93648 0.95971 0.95697 0.92812 0.81801
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.00 9.46 37.15 0.35 -1.65 16
2 C 0.17 2.08 3.81 -68.86 -0.26 1.82 16
3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
4 N -0.84 -8.90 9.19 -5.65 -0.05 -8.95 16
5 C -0.25 -3.90 5.09 -105.05 -0.53 -4.43 16
6 C 0.04 0.69 11.35 -17.37 -0.20 0.50 16
7 N -0.30 -6.07 12.58 30.63 0.39 -5.68 16
8 N -0.34 -6.83 3.53 -54.87 -0.19 -7.02 16
9 C 0.15 3.17 3.35 -67.93 -0.23 2.94 16
10 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16
11 C -0.15 -2.59 8.64 37.15 0.32 -2.27 16
12 C 0.02 0.50 4.77 -27.88 -0.13 0.36 16
13 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16
14 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16
15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16
16 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16
17 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16
18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
21 C 0.07 1.15 10.50 -17.22 -0.18 0.97 16
22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
25 H 0.34 3.31 8.05 -39.29 -0.32 2.99 16
26 H 0.34 2.78 9.04 -39.29 -0.36 2.43 16
27 H 0.17 2.24 7.60 -52.48 -0.40 1.84 16
28 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16
29 H 0.09 1.60 6.95 -51.92 -0.36 1.24 16
30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
34 H 0.16 2.44 7.26 -52.49 -0.38 2.06 16
LS Contribution 286.82 15.07 4.32 4.32
Total: -1.00 -30.80 286.82 -6.14 -36.94
By element:
Atomic # 1 Polarization: 9.53 SS G_CDS: -5.07 Total: 4.46 kcal
Atomic # 6 Polarization: -13.26 SS G_CDS: -1.25 Total: -14.51 kcal
Atomic # 7 Polarization: -48.07 SS G_CDS: 0.88 Total: -47.20 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -30.80 -6.14 -36.94 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695894260.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.844 kcal
(2) G-P(sol) polarization free energy of solvation -30.799 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.045 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds