Wall clock time and date at job start Mon Mar 30 2020 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3 6 6 C 1.39868 * 126.04052 * 79.69351 * 5 2 1 7 7 N 1.30832 * 108.20191 * 179.81969 * 6 5 2 8 8 N 1.40086 * 108.20688 * 0.43458 * 7 6 5 9 9 C 1.46502 * 126.03615 * 179.70172 * 8 7 6 10 10 H 1.08996 * 109.47225 * 25.02013 * 9 8 7 11 11 C 1.52993 * 109.46781 * 145.02543 * 9 8 7 12 12 C 1.53000 * 109.46741 * 265.02541 * 9 8 7 13 13 C 1.50705 * 109.47066 * 175.00445 * 12 9 8 14 14 H 1.08003 * 119.99637 * 359.97438 * 13 12 9 15 15 C 1.37874 * 119.99993 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00337 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47259 * 119.99813 * 17 15 13 20 20 H 1.48500 * 109.47099 * 240.00180 * 17 15 13 21 21 C 1.34942 * 107.92470 * 359.72075 * 8 7 6 22 22 H 1.09002 * 109.47018 * 299.99687 * 1 2 3 23 23 H 1.08999 * 109.47836 * 59.99714 * 1 2 3 24 24 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00309 * 296.04346 * 4 2 1 26 26 H 1.00902 * 110.99923 * 60.00509 * 4 2 1 27 27 H 1.08010 * 125.89527 * 359.97438 * 6 5 2 28 28 H 1.08999 * 109.47732 * 60.00264 * 11 9 8 29 29 H 1.09008 * 109.47236 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.47538 * 299.99373 * 11 9 8 31 31 H 1.09004 * 109.47238 * 294.99962 * 12 9 8 32 32 H 1.08990 * 109.47514 * 55.00186 * 12 9 8 33 33 H 0.97002 * 120.00655 * 179.97438 * 16 15 13 34 34 H 1.07991 * 126.13030 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 2.1159 -2.0957 1.4043 7 7 2.6023 -2.3294 2.5962 8 7 2.8347 -1.0984 3.2231 9 6 3.3710 -0.9063 4.5729 10 1 3.9645 -1.7758 4.8552 11 6 4.2531 0.3435 4.5979 12 6 2.2155 -0.7350 5.5610 13 6 2.7611 -0.6602 6.9638 14 1 3.8255 -0.7285 7.1335 15 6 1.9015 -0.5046 8.0305 16 7 0.6054 -0.4210 7.8238 17 14 2.5777 -0.4126 9.7694 18 1 4.0575 -0.5315 9.7319 19 1 2.2005 0.8877 10.3791 20 1 2.0129 -1.5217 10.5794 21 6 2.4769 -0.1209 2.3644 22 1 -0.3633 0.5138 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7502 -1.6648 -1.1910 26 1 1.6961 -0.2349 -2.0386 27 1 1.8307 -2.8434 0.6789 28 1 3.6595 1.2130 4.3157 29 1 4.6518 0.4868 5.6023 30 1 5.0763 0.2214 3.8940 31 1 1.6747 0.1834 5.3321 32 1 1.5385 -1.5852 5.4794 33 1 0.0006 -0.3119 8.5742 34 1 2.5353 0.9415 2.5489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695894260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:32 Heat of formation + Delta-G solvation = 36.510997 kcal Electronic energy + Delta-G solvation = -15112.091548 eV Core-core repulsion = 12659.021285 eV Total energy + Delta-G solvation = -2453.070263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15397 -37.55122 -36.34617 -34.44492 -31.31713 -30.60215 -29.02903 -28.87386 -25.86516 -23.85377 -23.19380 -20.83672 -20.64742 -18.68351 -17.64396 -16.74045 -16.45825 -15.84976 -15.59907 -15.16846 -14.89120 -14.41028 -14.13960 -13.96336 -13.71152 -13.56758 -13.11408 -12.87073 -12.79745 -12.58417 -12.36291 -12.35537 -11.94258 -11.70074 -11.39895 -11.24444 -10.64018 -10.25957 -9.61417 -9.10376 -8.25428 -6.38031 1.11242 1.40447 1.41423 1.54339 1.72918 1.96475 2.39580 3.09350 3.64042 3.91842 4.04253 4.09183 4.20822 4.30923 4.40411 4.42189 4.50286 4.76115 4.87041 4.88182 4.98902 5.06803 5.21485 5.26484 5.32671 5.38835 5.48452 5.68697 5.87333 6.03614 6.29450 6.38854 6.76750 6.77819 6.92567 7.32104 8.87276 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.049190 B = 0.005814 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.085165 B = 4814.500221 C = 4995.420158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.176 3.824 3 H 0.086 0.914 4 N -0.844 5.844 5 C -0.240 4.240 6 C 0.045 3.955 7 N -0.347 5.347 8 N -0.363 5.363 9 C 0.162 3.838 10 H 0.079 0.921 11 C -0.137 4.137 12 C 0.032 3.968 13 C -0.533 4.533 14 H 0.075 0.925 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.255 1.255 19 H -0.277 1.277 20 H -0.284 1.284 21 C 0.051 3.949 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.343 0.657 26 H 0.352 0.648 27 H 0.199 0.801 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.000 1.000 32 H -0.023 1.023 33 H 0.264 0.736 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 2.879 -14.437 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.064 3.936 3 H 0.105 0.895 4 N -0.375 5.375 5 C -0.252 4.252 6 C -0.140 4.140 7 N -0.168 5.168 8 N -0.144 5.144 9 C 0.061 3.939 10 H 0.098 0.902 11 C -0.195 4.195 12 C -0.006 4.006 13 C -0.571 4.571 14 H 0.093 0.907 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.179 1.179 19 H -0.203 1.203 20 H -0.210 1.210 21 C -0.096 4.096 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.156 0.844 26 H 0.166 0.834 27 H 0.216 0.784 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.018 0.982 32 H -0.004 1.004 33 H 0.073 0.927 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.763 2.199 -13.109 13.814 hybrid contribution -1.554 0.246 0.428 1.630 sum 2.210 2.445 -12.681 13.102 Atomic orbital electron populations 1.22569 0.96836 1.01931 1.02196 1.19455 0.91567 0.96648 0.85951 0.89547 1.58826 1.67658 1.07175 1.03851 1.20133 1.14067 0.93069 0.97942 1.23969 0.99009 0.96860 0.94132 1.77257 1.23852 1.05780 1.09943 1.49098 1.48556 1.03462 1.13316 1.21472 0.95791 1.00316 0.76286 0.90233 1.21966 0.98507 0.95113 1.03886 1.19260 0.92697 0.94814 0.93792 1.21493 0.94186 1.50217 0.91228 0.90700 1.25991 0.94935 0.94479 1.04195 1.70126 1.03715 1.50711 1.32895 0.85324 0.79249 0.77650 0.78395 1.17860 1.20251 1.20951 1.22648 0.99848 0.96507 0.90634 0.93481 0.90710 0.93056 0.84361 0.83425 0.78415 0.91606 0.89556 0.91247 0.98180 1.00447 0.92711 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.46 71.98 0.68 -2.83 16 2 C 0.18 3.85 3.81 44.17 0.17 4.02 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 N -0.84 -15.38 9.19 -171.80 -1.58 -16.96 16 5 C -0.24 -7.19 5.09 -20.14 -0.10 -7.30 16 6 C 0.05 1.48 11.35 85.24 0.97 2.45 16 7 N -0.35 -14.23 12.58 -57.02 -0.72 -14.95 16 8 N -0.36 -14.67 3.53 -327.51 -1.15 -15.82 16 9 C 0.16 6.89 3.35 44.99 0.15 7.04 16 10 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 11 C -0.14 -4.64 8.64 71.98 0.62 -4.02 16 12 C 0.03 1.72 4.77 29.85 0.14 1.86 16 13 C -0.53 -29.08 8.41 25.60 0.22 -28.86 16 14 H 0.07 3.80 7.06 -2.91 -0.02 3.78 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 17 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C 0.05 1.74 10.50 83.54 0.88 2.62 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.34 5.72 8.05 -89.70 -0.72 4.99 16 26 H 0.35 4.66 9.04 -89.69 -0.81 3.85 16 27 H 0.20 4.91 7.60 -2.91 -0.02 4.89 16 28 H 0.06 2.10 7.16 -2.39 -0.02 2.08 16 29 H 0.09 2.98 6.95 -2.38 -0.02 2.96 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 34 H 0.18 5.26 7.26 -2.92 -0.02 5.24 16 Total: -1.00 -67.92 286.82 2.61 -65.31 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.44 Total: 18.06 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.18 Total: -24.44 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.17 Total: -104.06 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -67.92 2.61 -65.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695894260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.819 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds