Wall clock time and date at job start Mon Mar 30 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46897 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 11 15 15 C 1.53005 * 115.54814 * 179.91529 * 14 13 12 16 16 C 1.53002 * 117.50000 * 34.32869 * 15 14 13 17 17 C 1.53003 * 117.49761 * 325.66631 * 15 14 13 18 18 C 1.53002 * 117.50163 * 34.20894 * 14 13 12 19 19 C 1.52993 * 117.50285 * 325.58221 * 14 13 12 20 20 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 22 22 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 23 23 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 24 24 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 25 25 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 26 26 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 27 27 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 28 28 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 29 29 H 1.00901 * 111.00013 * 303.95615 * 13 12 11 30 30 H 1.08993 * 115.54984 * 179.97438 * 15 14 13 31 31 H 1.08998 * 117.49612 * 0.02562 * 16 15 14 32 32 H 1.09000 * 117.49856 * 145.02526 * 16 15 14 33 33 H 1.08990 * 117.50191 * 214.97724 * 17 15 14 34 34 H 1.08994 * 117.49868 * 359.97438 * 17 15 14 35 35 H 1.08999 * 117.49430 * 359.97438 * 18 14 13 36 36 H 1.08994 * 117.49649 * 145.02001 * 18 14 13 37 37 H 1.09001 * 117.50754 * 214.98364 * 19 14 13 38 38 H 1.09008 * 117.50051 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7399 -7.4223 -0.0018 14 6 2.6644 -8.5638 -0.0018 15 6 2.0069 -9.9454 0.0002 16 6 0.6905 -10.1024 -0.7635 17 6 0.6923 -10.1010 0.7673 18 6 3.9813 -8.4066 0.7612 19 6 3.9790 -8.4084 -0.7688 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8719 -3.6045 0.8894 24 1 2.8719 -3.6044 -0.8905 25 1 0.8533 -5.0451 0.8886 26 1 0.8538 -5.0445 -0.8914 27 1 3.1011 -6.0919 -0.8918 28 1 3.1011 -6.0928 0.8882 29 1 1.1038 -7.4725 0.7798 30 1 2.6928 -10.7924 -0.0002 31 1 0.2930 -9.2216 -1.2677 32 1 0.5102 -11.0530 -1.2655 33 1 0.5131 -11.0505 1.2716 34 1 0.2961 -9.2192 1.2709 35 1 4.1618 -7.4558 1.2628 36 1 4.3793 -9.2874 1.2648 37 1 4.3758 -9.2903 -1.2718 38 1 4.1579 -7.4591 -1.2739 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697402723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:40 Heat of formation + Delta-G solvation = 30.309881 kcal Electronic energy + Delta-G solvation = -14867.727445 eV Core-core repulsion = 12517.928625 eV Total energy + Delta-G solvation = -2349.798820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51106 -36.12884 -34.81679 -32.96335 -31.29120 -27.95736 -24.85660 -23.33716 -22.82241 -22.13047 -21.28533 -20.14300 -18.97137 -16.48018 -16.14137 -15.90870 -15.22768 -14.50188 -14.33285 -13.91204 -13.43204 -12.83526 -12.47312 -12.08514 -11.93146 -11.55907 -11.47854 -11.46848 -11.25490 -10.94064 -10.88820 -10.52568 -10.50292 -10.39452 -10.18874 -9.78446 -9.61250 -9.24939 -9.00280 -8.31079 -8.14972 -5.96150 -3.98511 3.35298 3.39444 3.39648 3.42044 3.99481 4.12850 4.37129 4.49090 4.67396 4.81261 4.93296 5.13995 5.19171 5.30011 5.39301 5.50075 5.54205 5.60882 5.65312 5.71883 5.89391 5.96774 6.03232 6.05041 6.16265 6.18064 6.29621 6.51367 6.82916 6.96857 7.05763 7.23937 7.39104 7.72247 7.88302 8.04744 8.47487 9.08730 9.65231 11.15196 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053980 B = 0.004152 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.585100 B = 6742.768740 C = 7091.854874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.052 3.948 13 N -0.649 5.649 14 C 0.085 3.915 15 C -0.115 4.115 16 C -0.164 4.164 17 C -0.179 4.179 18 C -0.221 4.221 19 C -0.169 4.169 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.342 0.658 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -19.826 0.717 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.076 4.076 13 N -0.279 5.279 14 C -0.007 4.007 15 C -0.133 4.133 16 C -0.201 4.201 17 C -0.216 4.216 18 C -0.261 4.261 19 C -0.207 4.207 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.162 0.838 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.066 -19.695 0.031 20.110 hybrid contribution 0.870 1.003 0.939 1.626 sum 4.936 -18.691 0.970 19.357 Atomic orbital electron populations 1.69957 1.06048 1.26638 1.50927 1.25028 0.94842 0.99209 0.95399 0.86669 0.79592 0.83212 0.78588 1.20253 1.21286 1.20286 1.21254 0.92976 0.91234 1.50491 0.92835 1.19086 0.94015 0.91316 0.97158 1.21583 0.99083 0.93905 1.00064 1.21639 0.97861 0.93808 1.02008 1.22256 0.96647 0.88158 1.00531 1.60290 1.18322 1.00489 1.48814 1.20910 0.85716 0.90654 1.03440 1.21561 0.90584 0.94669 1.06529 1.22942 0.99841 1.03302 0.94025 1.22924 1.00718 1.02869 0.95081 1.23605 1.04160 1.03422 0.94874 1.23175 0.99763 1.03543 0.94208 0.92988 0.96589 0.96745 0.93690 0.93451 0.92752 0.91619 0.90815 0.94947 0.83791 0.87573 0.87431 0.89294 0.89053 0.88720 0.88403 0.89003 0.88696 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.15 16 12 C 0.05 0.76 4.80 -3.82 -0.02 0.74 16 13 N -0.65 -8.38 6.02 -99.96 -0.60 -8.98 16 14 C 0.09 0.97 2.97 -131.60 -0.39 0.58 16 15 C -0.11 -1.13 5.85 -90.61 -0.53 -1.66 16 16 C -0.16 -1.58 10.02 -26.69 -0.27 -1.85 16 17 C -0.18 -1.63 9.99 -26.69 -0.27 -1.90 16 18 C -0.22 -2.40 9.57 -26.73 -0.26 -2.66 16 19 C -0.17 -1.87 9.57 -26.73 -0.26 -2.12 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.08 6.21 -51.93 -0.32 0.76 16 28 H 0.03 0.46 6.20 -51.93 -0.32 0.14 16 29 H 0.34 4.21 7.29 -39.29 -0.29 3.92 16 30 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.11 1.20 7.87 -51.93 -0.41 0.79 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.90 6.81 -51.93 -0.35 0.55 16 35 H 0.10 1.15 6.21 -51.93 -0.32 0.82 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.19 6.22 -51.92 -0.32 0.86 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -30.06 305.51 -9.63 -39.69 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.53 Total: 1.33 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.82 Total: -26.90 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.13 Total: -35.71 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.06 -9.63 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697402723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.002 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds