Wall clock time and date at job start Mon Mar 30 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46897 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99888 * 180.02562 * 13 12 11 15 15 C 1.53005 * 115.54814 * 179.91529 * 14 13 12 16 16 C 1.53002 * 117.50000 * 34.32869 * 15 14 13 17 17 C 1.53003 * 117.49761 * 325.66631 * 15 14 13 18 18 C 1.53002 * 117.50163 * 34.20894 * 14 13 12 19 19 C 1.52993 * 117.50285 * 325.58221 * 14 13 12 20 20 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 22 22 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 23 23 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 24 24 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 25 25 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 26 26 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 27 27 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 28 28 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 29 29 H 1.00901 * 111.00013 * 303.95615 * 13 12 11 30 30 H 1.08993 * 115.54984 * 179.97438 * 15 14 13 31 31 H 1.08998 * 117.49612 * 0.02562 * 16 15 14 32 32 H 1.09000 * 117.49856 * 145.02526 * 16 15 14 33 33 H 1.08990 * 117.50191 * 214.97724 * 17 15 14 34 34 H 1.08994 * 117.49868 * 359.97438 * 17 15 14 35 35 H 1.08999 * 117.49430 * 359.97438 * 18 14 13 36 36 H 1.08994 * 117.49649 * 145.02001 * 18 14 13 37 37 H 1.09001 * 117.50754 * 214.98364 * 19 14 13 38 38 H 1.09008 * 117.50051 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7399 -7.4223 -0.0018 14 6 2.6644 -8.5638 -0.0018 15 6 2.0069 -9.9454 0.0002 16 6 0.6905 -10.1024 -0.7635 17 6 0.6923 -10.1010 0.7673 18 6 3.9813 -8.4066 0.7612 19 6 3.9790 -8.4084 -0.7688 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8719 -3.6045 0.8894 24 1 2.8719 -3.6044 -0.8905 25 1 0.8533 -5.0451 0.8886 26 1 0.8538 -5.0445 -0.8914 27 1 3.1011 -6.0919 -0.8918 28 1 3.1011 -6.0928 0.8882 29 1 1.1038 -7.4725 0.7798 30 1 2.6928 -10.7924 -0.0002 31 1 0.2930 -9.2216 -1.2677 32 1 0.5102 -11.0530 -1.2655 33 1 0.5131 -11.0505 1.2716 34 1 0.2961 -9.2192 1.2709 35 1 4.1618 -7.4558 1.2628 36 1 4.3793 -9.2874 1.2648 37 1 4.3758 -9.2903 -1.2718 38 1 4.1579 -7.4591 -1.2739 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697402723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:40 Heat of formation + Delta-G solvation = 13.506430 kcal Electronic energy + Delta-G solvation = -14868.456097 eV Core-core repulsion = 12517.928625 eV Total energy + Delta-G solvation = -2350.527472 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40494 -37.22449 -36.20987 -34.75534 -32.87797 -29.66316 -26.48817 -24.55424 -23.63752 -22.89267 -22.72610 -21.82987 -19.90848 -18.46236 -17.25622 -16.88529 -16.53491 -16.50527 -15.32842 -15.09259 -14.54347 -14.33526 -14.17020 -13.63142 -13.22112 -12.94970 -12.80136 -12.60136 -12.55081 -12.26740 -12.22869 -12.09709 -11.88540 -11.67554 -11.38110 -11.32793 -11.02102 -10.99075 -10.60603 -10.55649 -9.13289 -8.20373 -6.32244 1.39130 1.42663 1.50675 2.40528 2.59466 3.02198 3.12240 3.31354 3.56933 3.82753 4.00599 4.04696 4.15867 4.22239 4.39453 4.40320 4.47245 4.56779 4.69622 4.78368 4.85266 4.87375 4.91851 5.05169 5.14247 5.19919 5.23342 5.25925 5.28756 5.33359 5.41027 5.53056 5.75786 5.85359 6.06597 6.24571 6.39014 6.84914 7.37149 8.91393 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053980 B = 0.004152 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.585100 B = 6742.768740 C = 7091.854874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.066 3.934 13 N -0.655 5.655 14 C 0.075 3.925 15 C -0.117 4.117 16 C -0.169 4.169 17 C -0.175 4.175 18 C -0.215 4.215 19 C -0.172 4.172 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.010 1.010 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.345 0.655 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 -20.711 0.973 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.063 4.063 13 N -0.285 5.285 14 C -0.017 4.017 15 C -0.135 4.135 16 C -0.206 4.206 17 C -0.212 4.212 18 C -0.255 4.255 19 C -0.210 4.210 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.464 -20.598 0.288 21.312 hybrid contribution 0.394 1.258 0.854 1.571 sum 5.858 -19.339 1.143 20.239 Atomic orbital electron populations 1.70097 1.07870 1.27874 1.51609 1.26020 0.95796 1.03476 0.94649 0.85483 0.78277 0.77953 0.79234 1.19128 1.20716 1.19081 1.21717 0.93568 0.92536 1.50710 0.92200 1.19016 0.94492 0.93270 0.94628 1.21384 0.97978 0.93615 1.00416 1.21454 0.97992 0.93314 1.01498 1.21995 0.95641 0.87882 1.00762 1.60221 1.18746 1.00366 1.49188 1.21060 0.85767 0.90733 1.04109 1.21631 0.90927 0.94138 1.06811 1.22929 0.99908 1.03243 0.94475 1.22984 1.00054 1.03423 0.94729 1.23609 1.03510 1.03605 0.94779 1.23240 0.99565 1.03737 0.94443 0.92737 0.99260 0.99185 0.93118 0.93141 0.92800 0.92641 0.90883 0.94441 0.83488 0.85906 0.89397 0.87755 0.87347 0.89466 0.89402 0.87404 0.87067 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.05 5.15 30.60 0.16 -3.89 16 11 C -0.10 -3.65 5.47 30.60 0.17 -3.48 16 12 C 0.07 1.86 4.80 86.30 0.41 2.27 16 13 N -0.65 -16.38 6.02 -470.17 -2.83 -19.21 16 14 C 0.08 1.60 2.97 3.53 0.01 1.61 16 15 C -0.12 -2.04 5.85 -10.79 -0.06 -2.10 16 16 C -0.17 -3.00 10.02 30.62 0.31 -2.69 16 17 C -0.17 -2.87 9.99 30.62 0.31 -2.56 16 18 C -0.22 -4.25 9.57 30.60 0.29 -3.96 16 19 C -0.17 -3.50 9.57 30.59 0.29 -3.21 16 20 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 21 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.09 6.21 -2.39 -0.01 2.07 16 28 H 0.04 1.03 6.20 -2.39 -0.01 1.01 16 29 H 0.34 8.25 7.29 -89.69 -0.65 7.60 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.92 7.87 -2.39 -0.02 1.91 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.56 6.81 -2.39 -0.02 1.54 16 35 H 0.09 1.92 6.21 -2.39 -0.01 1.91 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 2.01 6.22 -2.38 -0.01 1.99 16 Total: -1.00 -64.30 305.51 2.58 -61.72 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.37 Total: 16.53 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.73 Total: -48.12 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.55 Total: -77.13 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.30 2.58 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697402723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.226 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds