Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46950 * 180.02562 * 13 12 11 15 15 H 1.09005 * 115.55178 * 330.58296 * 14 13 12 16 16 C 1.52997 * 117.49696 * 116.25574 * 14 13 12 17 17 C 1.53002 * 117.49756 * 184.91427 * 14 13 12 18 18 H 1.09007 * 117.49662 * 145.02020 * 17 14 13 19 19 C 1.53003 * 117.49848 * 0.02562 * 17 14 13 20 20 C 1.52998 * 117.49921 * 128.74337 * 19 17 14 21 21 C 1.52999 * 117.49776 * 60.08618 * 19 17 14 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 30 30 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 31 31 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 32 32 H 1.08998 * 117.49830 * 214.97572 * 16 14 13 33 33 H 1.08999 * 117.49932 * 359.97438 * 16 14 13 34 34 H 1.08994 * 115.54506 * 274.41761 * 19 17 14 35 35 H 1.08999 * 117.49892 * 0.02562 * 20 19 17 36 36 H 1.09001 * 117.49384 * 145.01875 * 20 19 17 37 37 H 1.08999 * 117.49767 * 214.97901 * 21 19 17 38 38 H 1.08998 * 117.50348 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0017 15 1 3.7103 -8.3064 -0.4821 16 6 2.7880 -9.4569 1.2194 17 6 2.2289 -9.9613 -0.1134 18 1 2.8306 -10.6779 -0.6726 19 6 0.7139 -10.1462 -0.2202 20 6 0.1870 -11.0133 -1.3653 21 6 0.0047 -9.4942 -1.4088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 3.0704 -6.0365 0.7816 30 1 1.1108 -7.4691 0.8924 31 1 1.1089 -7.4697 -0.8876 32 1 3.7571 -9.8418 1.5364 33 1 2.0767 -9.2565 2.0206 34 1 0.1769 -10.1835 0.7276 35 1 0.9198 -11.4524 -2.0424 36 1 -0.6968 -11.6209 -1.1710 37 1 -0.9990 -9.1029 -1.2431 38 1 0.6173 -8.9331 -2.1145 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698885091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = 25.726139 kcal Electronic energy + Delta-G solvation = -14615.473938 eV Core-core repulsion = 12265.476352 eV Total energy + Delta-G solvation = -2349.997586 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15404 -36.32851 -35.06857 -33.24814 -31.07151 -27.26568 -24.83261 -23.83102 -22.59405 -22.01366 -21.32144 -20.20710 -19.15699 -16.28465 -16.10456 -15.75415 -15.12771 -14.54249 -14.42597 -13.82801 -13.61715 -13.11752 -12.81655 -12.17260 -11.89061 -11.60198 -11.56874 -11.39863 -11.18890 -10.92093 -10.80542 -10.77997 -10.53970 -10.43919 -9.86148 -9.68580 -9.59145 -9.27922 -9.00056 -8.31553 -8.10355 -5.96564 -3.98401 3.33518 3.40709 3.42273 3.45577 3.80316 4.30096 4.42175 4.50869 4.69332 4.78446 4.92750 5.05569 5.17163 5.32299 5.39265 5.40263 5.47511 5.64578 5.68013 5.74393 5.80056 5.89201 5.95499 5.97882 6.05342 6.08821 6.23013 6.37100 6.76811 6.82631 7.18314 7.41931 7.70252 7.73105 7.87978 8.04341 8.47842 9.09140 9.65465 11.14985 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056465 B = 0.003808 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.761828 B = 7351.001174 C = 7682.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.088 3.912 14 C -0.138 4.138 15 H 0.111 0.889 16 C -0.177 4.177 17 C -0.121 4.121 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.179 4.179 21 C -0.175 4.175 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.337 0.663 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -20.750 0.122 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.322 5.322 13 C -0.042 4.042 14 C -0.157 4.157 15 H 0.129 0.871 16 C -0.214 4.214 17 C -0.140 4.140 18 H 0.122 0.878 19 C -0.142 4.142 20 C -0.216 4.216 21 C -0.212 4.212 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.154 0.846 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.174 -20.618 -0.565 20.740 hybrid contribution 0.044 0.883 0.968 1.311 sum 2.218 -19.735 0.403 19.863 Atomic orbital electron populations 1.69981 1.06060 1.26408 1.51210 1.25040 0.94855 0.99279 0.95434 0.86538 0.80153 0.83803 0.77527 1.19715 1.21021 1.21076 1.21307 0.93107 0.91061 1.50087 0.92610 1.19076 0.94050 0.91423 0.97108 1.21620 0.99165 0.93002 1.00702 1.22111 0.94137 0.90855 0.99805 1.60567 1.20411 1.01436 1.49742 1.21560 0.94219 0.87752 1.00628 1.22450 1.01180 0.90363 1.01677 0.87051 1.23156 1.02391 1.04378 0.91462 1.21806 0.93602 0.97413 1.01177 0.87796 1.21682 0.93323 1.05252 0.93915 1.22984 1.03056 0.93817 1.01759 1.23035 1.01767 0.95160 1.01272 0.93122 0.96575 0.96819 0.93687 0.92564 0.91565 0.95899 0.84622 0.95636 0.90264 0.88881 0.88928 0.87934 0.88887 0.89013 0.88794 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.29 5.41 -26.74 -0.14 -2.43 16 11 C 0.06 1.07 5.69 -3.83 -0.02 1.05 16 12 N -0.69 -10.57 6.50 -113.78 -0.74 -11.31 16 13 C 0.09 1.13 4.92 -3.82 -0.02 1.11 16 14 C -0.14 -1.51 5.93 -90.62 -0.54 -2.05 16 15 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 16 C -0.18 -1.68 9.90 -26.69 -0.26 -1.94 16 17 C -0.12 -1.16 5.87 -90.58 -0.53 -1.69 16 18 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.12 -1.15 5.25 -90.62 -0.48 -1.63 16 20 C -0.18 -1.49 10.25 -26.70 -0.27 -1.77 16 21 C -0.18 -1.66 8.45 -26.70 -0.23 -1.89 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.34 4.87 8.73 -39.29 -0.34 4.52 16 30 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 31 H 0.08 1.05 5.64 -51.93 -0.29 0.75 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.01 7.31 -51.93 -0.38 0.63 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -30.07 311.35 -10.25 -40.32 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.88 Total: 0.66 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -3.04 Total: -24.65 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.00 Total: -38.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.07 -10.25 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698885091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.051 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds