Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46950 * 180.02562 * 13 12 11 15 15 H 1.09005 * 115.55178 * 330.58296 * 14 13 12 16 16 C 1.52997 * 117.49696 * 116.25574 * 14 13 12 17 17 C 1.53002 * 117.49756 * 184.91427 * 14 13 12 18 18 H 1.09007 * 117.49662 * 145.02020 * 17 14 13 19 19 C 1.53003 * 117.49848 * 0.02562 * 17 14 13 20 20 C 1.52998 * 117.49921 * 128.74337 * 19 17 14 21 21 C 1.52999 * 117.49776 * 60.08618 * 19 17 14 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 30 30 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 31 31 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 32 32 H 1.08998 * 117.49830 * 214.97572 * 16 14 13 33 33 H 1.08999 * 117.49932 * 359.97438 * 16 14 13 34 34 H 1.08994 * 115.54506 * 274.41761 * 19 17 14 35 35 H 1.08999 * 117.49892 * 0.02562 * 20 19 17 36 36 H 1.09001 * 117.49384 * 145.01875 * 20 19 17 37 37 H 1.08999 * 117.49767 * 214.97901 * 21 19 17 38 38 H 1.08998 * 117.50348 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0017 15 1 3.7103 -8.3064 -0.4821 16 6 2.7880 -9.4569 1.2194 17 6 2.2289 -9.9613 -0.1134 18 1 2.8306 -10.6779 -0.6726 19 6 0.7139 -10.1462 -0.2202 20 6 0.1870 -11.0133 -1.3653 21 6 0.0047 -9.4942 -1.4088 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 3.0704 -6.0365 0.7816 30 1 1.1108 -7.4691 0.8924 31 1 1.1089 -7.4697 -0.8876 32 1 3.7571 -9.8418 1.5364 33 1 2.0767 -9.2565 2.0206 34 1 0.1769 -10.1835 0.7276 35 1 0.9198 -11.4524 -2.0424 36 1 -0.6968 -11.6209 -1.1710 37 1 -0.9990 -9.1029 -1.2431 38 1 0.6173 -8.9331 -2.1145 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698885091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = 8.882535 kcal Electronic energy + Delta-G solvation = -14616.204331 eV Core-core repulsion = 12265.476352 eV Total energy + Delta-G solvation = -2350.727979 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96925 -37.59556 -36.14896 -35.13195 -32.91437 -28.92637 -26.41219 -24.59503 -23.97227 -23.06358 -22.29063 -21.82087 -20.07146 -18.47674 -17.18866 -16.61506 -16.49792 -16.25976 -15.51906 -15.16974 -14.87588 -14.45968 -14.09085 -13.66429 -13.54161 -13.23993 -12.74377 -12.48820 -12.39769 -12.31660 -12.27682 -12.07395 -11.68936 -11.57408 -11.51501 -11.38171 -11.10104 -10.61346 -10.56138 -10.37029 -9.37185 -8.20469 -6.31633 1.40223 1.40637 1.54468 2.41091 2.65043 3.06100 3.12556 3.22961 3.64058 3.91619 4.01415 4.11569 4.20854 4.28164 4.33105 4.41269 4.48168 4.57160 4.71074 4.76093 4.80916 4.88812 4.95713 4.99459 5.04147 5.09250 5.24013 5.25574 5.28829 5.34262 5.35224 5.52032 5.74240 5.85349 6.07966 6.27091 6.50010 6.85406 7.37687 8.91785 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056465 B = 0.003808 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.761828 B = 7351.001174 C = 7682.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.072 3.928 12 N -0.691 5.691 13 C 0.092 3.908 14 C -0.150 4.150 15 H 0.108 0.892 16 C -0.168 4.168 17 C -0.113 4.113 18 H 0.115 0.885 19 C -0.131 4.131 20 C -0.167 4.167 21 C -0.187 4.187 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.343 0.657 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -21.512 0.331 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.130 4.130 11 C -0.057 4.057 12 N -0.322 5.322 13 C -0.037 4.037 14 C -0.169 4.169 15 H 0.126 0.874 16 C -0.205 4.205 17 C -0.132 4.132 18 H 0.133 0.867 19 C -0.149 4.149 20 C -0.204 4.204 21 C -0.224 4.224 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.161 0.839 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.350 -21.402 -0.354 21.666 hybrid contribution -0.356 1.081 0.898 1.450 sum 2.994 -20.321 0.545 20.548 Atomic orbital electron populations 1.70109 1.07827 1.27733 1.51805 1.26020 0.95820 1.03484 0.94704 0.85362 0.79057 0.78572 0.77831 1.18568 1.20290 1.20267 1.21732 0.93567 0.92385 1.50386 0.92209 1.18984 0.94450 0.93174 0.94753 1.21375 0.98019 0.92863 1.00764 1.21816 0.94016 0.90379 0.99472 1.60495 1.19956 1.01566 1.50190 1.21542 0.94663 0.87172 1.00314 1.22300 1.00597 0.90423 1.03537 0.87366 1.23218 1.03075 1.03117 0.91097 1.21878 0.93836 0.96269 1.01208 0.86708 1.21735 0.93249 1.05808 0.94089 1.23066 1.03440 0.92990 1.00872 1.23010 1.01642 0.96271 1.01496 0.92752 0.99039 0.99081 0.93054 0.92866 0.92171 0.96103 0.83873 0.95770 0.90766 0.87469 0.89007 0.87865 0.88158 0.87880 0.88920 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.31 4.97 29.84 0.15 1.46 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.80 16 11 C 0.07 2.61 5.69 86.30 0.49 3.10 16 12 N -0.69 -20.61 6.50 -513.89 -3.34 -23.95 16 13 C 0.09 2.30 4.92 86.30 0.42 2.73 16 14 C -0.15 -3.07 5.93 -10.79 -0.06 -3.13 16 15 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 16 C -0.17 -2.85 9.90 30.62 0.30 -2.54 16 17 C -0.11 -1.94 5.87 -10.77 -0.06 -2.01 16 18 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 19 C -0.13 -2.24 5.25 -10.79 -0.06 -2.29 16 20 C -0.17 -2.48 10.25 30.62 0.31 -2.16 16 21 C -0.19 -3.41 8.45 30.62 0.26 -3.15 16 22 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.34 9.52 8.73 -89.69 -0.78 8.73 16 30 H 0.02 0.62 7.87 -2.39 -0.02 0.60 16 31 H 0.07 1.94 5.64 -2.39 -0.01 1.92 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.80 7.31 -2.39 -0.02 1.78 16 Total: -1.00 -63.75 311.35 1.81 -61.94 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.22 Total: 15.67 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 2.62 Total: -43.08 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.06 Total: -81.59 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.75 1.81 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698885091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.824 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds