Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99589 * 2 1 4 4 H 1.48506 * 109.46835 * 239.99400 * 3 2 1 5 5 H 1.48500 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47076 * 119.99741 * 3 2 1 7 7 C 1.37877 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99797 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47029 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.55029 * 29.33571 * 14 13 12 16 16 C 1.52998 * 117.50440 * 243.62178 * 14 13 12 17 17 C 1.53001 * 60.00272 * 252.51233 * 16 14 13 18 18 H 1.08998 * 117.51550 * 252.51608 * 17 16 14 19 19 C 1.52996 * 117.50088 * 107.48478 * 17 16 14 20 20 C 1.53002 * 117.49888 * 162.63339 * 19 17 16 21 21 C 1.53000 * 117.50107 * 231.29101 * 19 17 16 22 22 H 0.97002 * 120.00228 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47386 * 59.98981 * 9 7 2 24 24 H 1.09003 * 109.46569 * 299.99447 * 9 7 2 25 25 H 1.08997 * 109.47279 * 59.98990 * 10 9 7 26 26 H 1.09003 * 109.46501 * 299.99540 * 10 9 7 27 27 H 1.09007 * 109.47123 * 59.99195 * 11 10 9 28 28 H 1.09003 * 109.46762 * 299.99650 * 11 10 9 29 29 H 1.00896 * 110.99998 * 56.04250 * 12 11 10 30 30 H 1.09004 * 109.46977 * 60.00009 * 13 12 11 31 31 H 1.08997 * 109.46833 * 299.99714 * 13 12 11 32 32 H 1.08999 * 117.50579 * 145.01983 * 16 14 13 33 33 H 1.09007 * 117.49702 * 0.02562 * 16 14 13 34 34 H 1.09002 * 115.54951 * 16.96313 * 19 17 16 35 35 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 36 36 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 37 37 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 38 38 H 1.08999 * 117.49959 * 144.99502 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7348 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0004 15 1 3.7119 -8.3056 0.4808 16 6 2.7836 -9.4596 -1.2152 17 6 2.2294 -9.9611 0.1198 18 1 2.8326 -10.6767 0.6785 19 6 0.7147 -10.1458 0.2312 20 6 0.1910 -11.0109 1.3794 21 6 0.0088 -9.4916 1.4205 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8722 -3.6042 0.8904 26 1 2.8720 -3.6043 -0.8895 27 1 0.8533 -5.0451 -0.8886 28 1 0.8541 -5.0446 0.8915 29 1 3.0705 -6.0364 0.7814 30 1 1.1089 -7.4697 -0.8876 31 1 1.1109 -7.4691 0.8925 32 1 3.7516 -9.8453 -1.5351 33 1 2.0694 -9.2610 -2.0144 34 1 0.1750 -10.1849 -0.7151 35 1 -0.6931 -11.6192 1.1886 36 1 0.9257 -11.4480 2.0557 37 1 0.6236 -8.9299 2.1239 38 1 -0.9953 -9.1003 1.2568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698885093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = 26.197220 kcal Electronic energy + Delta-G solvation = -14615.947874 eV Core-core repulsion = 12265.970715 eV Total energy + Delta-G solvation = -2349.977158 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14878 -36.32369 -35.07434 -33.25389 -31.07736 -27.26357 -24.81700 -23.79434 -22.59875 -21.99424 -21.43145 -20.17954 -19.16527 -16.28308 -15.84511 -15.79307 -15.40366 -14.51329 -14.37099 -13.80271 -13.64351 -13.23226 -12.66318 -12.16823 -11.80676 -11.62054 -11.59647 -11.39850 -11.17495 -10.90189 -10.88669 -10.75145 -10.53592 -10.48858 -9.90345 -9.67748 -9.58594 -9.27173 -9.02167 -8.30691 -8.04895 -5.96081 -3.98126 3.36272 3.40107 3.42380 3.43266 3.81250 4.34099 4.39975 4.51022 4.71290 4.77373 4.94215 5.02943 5.19120 5.33747 5.39485 5.40660 5.45545 5.63047 5.69298 5.75319 5.78296 5.88681 5.93805 5.99027 6.03948 6.07908 6.23558 6.37159 6.76889 6.82647 7.18389 7.42066 7.69892 7.72828 7.88210 8.04591 8.48008 9.08951 9.65571 11.15378 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056549 B = 0.003807 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.028904 B = 7353.399748 C = 7678.952880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.691 5.691 13 C 0.088 3.912 14 C -0.136 4.136 15 H 0.104 0.896 16 C -0.166 4.166 17 C -0.127 4.127 18 H 0.103 0.897 19 C -0.122 4.122 20 C -0.180 4.180 21 C -0.175 4.175 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.336 0.664 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -20.749 1.455 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.322 5.322 13 C -0.042 4.042 14 C -0.155 4.155 15 H 0.122 0.878 16 C -0.203 4.203 17 C -0.146 4.146 18 H 0.121 0.879 19 C -0.140 4.140 20 C -0.217 4.217 21 C -0.212 4.212 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.105 -20.613 0.764 20.734 hybrid contribution 0.093 0.893 0.899 1.270 sum 2.198 -19.720 1.663 19.912 Atomic orbital electron populations 1.69962 1.06059 1.26638 1.51013 1.25035 0.94856 0.99251 0.95404 0.86650 0.79564 0.83115 0.78622 1.20219 1.21325 1.20270 1.21233 0.93036 0.91095 1.50381 0.92717 1.19064 0.94033 0.91385 0.97094 1.21622 0.99169 0.93014 1.00689 1.22110 0.94125 0.90852 0.99797 1.60540 1.20418 1.01441 1.49770 1.21554 0.94253 0.87686 1.00663 1.22350 1.00528 0.90256 1.02321 0.87762 1.23070 1.02352 1.03534 0.91325 1.21847 0.93601 0.97453 1.01670 0.87903 1.21690 0.93386 1.05033 0.93889 1.22989 1.03081 0.93796 1.01813 1.23011 1.01757 0.95111 1.01331 0.93004 0.96593 0.96824 0.93698 0.92571 0.91610 0.95871 0.84708 0.91298 0.94470 0.88953 0.88717 0.87801 0.88980 0.88948 0.88581 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.44 16 11 C 0.06 1.08 5.68 -3.83 -0.02 1.05 16 12 N -0.69 -10.57 6.50 -113.78 -0.74 -11.31 16 13 C 0.09 1.13 4.92 -3.82 -0.02 1.11 16 14 C -0.14 -1.49 5.94 -90.62 -0.54 -2.03 16 15 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 16 C -0.17 -1.64 9.90 -26.73 -0.26 -1.91 16 17 C -0.13 -1.20 5.87 -90.62 -0.53 -1.74 16 18 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -1.13 5.25 -90.62 -0.48 -1.60 16 20 C -0.18 -1.48 10.25 -26.69 -0.27 -1.76 16 21 C -0.18 -1.64 8.44 -26.70 -0.23 -1.86 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.34 4.78 8.72 -39.29 -0.34 4.44 16 30 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 31 H 0.04 0.47 5.64 -51.93 -0.29 0.18 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.96 8.03 -51.92 -0.42 0.54 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.95 7.32 -51.92 -0.38 0.57 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -30.15 311.32 -10.25 -40.41 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.88 Total: 0.53 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.04 Total: -24.61 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.00 Total: -38.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.15 -10.25 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698885093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.604 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds