Wall clock time and date at job start Mon Mar 30 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99589 * 2 1 4 4 H 1.48506 * 109.46835 * 239.99400 * 3 2 1 5 5 H 1.48500 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47076 * 119.99741 * 3 2 1 7 7 C 1.37877 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99797 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47029 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.55029 * 29.33571 * 14 13 12 16 16 C 1.52998 * 117.50440 * 243.62178 * 14 13 12 17 17 C 1.53001 * 60.00272 * 252.51233 * 16 14 13 18 18 H 1.08998 * 117.51550 * 252.51608 * 17 16 14 19 19 C 1.52996 * 117.50088 * 107.48478 * 17 16 14 20 20 C 1.53002 * 117.49888 * 162.63339 * 19 17 16 21 21 C 1.53000 * 117.50107 * 231.29101 * 19 17 16 22 22 H 0.97002 * 120.00228 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47386 * 59.98981 * 9 7 2 24 24 H 1.09003 * 109.46569 * 299.99447 * 9 7 2 25 25 H 1.08997 * 109.47279 * 59.98990 * 10 9 7 26 26 H 1.09003 * 109.46501 * 299.99540 * 10 9 7 27 27 H 1.09007 * 109.47123 * 59.99195 * 11 10 9 28 28 H 1.09003 * 109.46762 * 299.99650 * 11 10 9 29 29 H 1.00896 * 110.99998 * 56.04250 * 12 11 10 30 30 H 1.09004 * 109.46977 * 60.00009 * 13 12 11 31 31 H 1.08997 * 109.46833 * 299.99714 * 13 12 11 32 32 H 1.08999 * 117.50579 * 145.01983 * 16 14 13 33 33 H 1.09007 * 117.49702 * 0.02562 * 16 14 13 34 34 H 1.09002 * 115.54951 * 16.96313 * 19 17 16 35 35 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 36 36 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 37 37 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 38 38 H 1.08999 * 117.49959 * 144.99502 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7348 -7.3950 0.0018 14 6 2.7597 -8.5309 0.0004 15 1 3.7119 -8.3056 0.4808 16 6 2.7836 -9.4596 -1.2152 17 6 2.2294 -9.9611 0.1198 18 1 2.8326 -10.6767 0.6785 19 6 0.7147 -10.1458 0.2312 20 6 0.1910 -11.0109 1.3794 21 6 0.0088 -9.4916 1.4205 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8722 -3.6042 0.8904 26 1 2.8720 -3.6043 -0.8895 27 1 0.8533 -5.0451 -0.8886 28 1 0.8541 -5.0446 0.8915 29 1 3.0705 -6.0364 0.7814 30 1 1.1089 -7.4697 -0.8876 31 1 1.1109 -7.4691 0.8925 32 1 3.7516 -9.8453 -1.5351 33 1 2.0694 -9.2610 -2.0144 34 1 0.1750 -10.1849 -0.7151 35 1 -0.6931 -11.6192 1.1886 36 1 0.9257 -11.4480 2.0557 37 1 0.6236 -8.9299 2.1239 38 1 -0.9953 -9.1003 1.2568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698885093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:33 Heat of formation + Delta-G solvation = 9.276688 kcal Electronic energy + Delta-G solvation = -14616.681603 eV Core-core repulsion = 12265.970715 eV Total energy + Delta-G solvation = -2350.710888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96256 -37.59287 -36.14216 -35.14068 -32.92286 -28.92712 -26.39449 -24.57484 -23.93246 -23.07414 -22.41326 -21.78598 -20.06513 -18.47090 -16.95220 -16.74325 -16.48080 -16.37499 -15.54276 -15.14770 -14.78958 -14.47309 -14.24949 -13.57615 -13.39016 -13.28672 -12.70758 -12.50194 -12.37844 -12.33023 -12.29543 -12.07735 -11.68807 -11.65017 -11.49722 -11.38354 -11.11896 -10.65706 -10.54995 -10.36536 -9.29590 -8.20084 -6.31514 1.40132 1.43749 1.51680 2.41278 2.65077 3.05559 3.12740 3.29413 3.60452 3.94644 4.01054 4.11677 4.19455 4.28016 4.33618 4.43775 4.51084 4.58318 4.71266 4.76063 4.77722 4.84295 4.97302 4.99553 5.03638 5.09472 5.23447 5.25616 5.28825 5.34970 5.35461 5.51612 5.74343 5.85299 6.08015 6.27138 6.50770 6.85174 7.37700 8.91748 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056549 B = 0.003807 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.028904 B = 7353.399748 C = 7678.952880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.692 5.692 13 C 0.092 3.908 14 C -0.148 4.148 15 H 0.108 0.892 16 C -0.165 4.165 17 C -0.114 4.114 18 H 0.116 0.884 19 C -0.131 4.131 20 C -0.167 4.167 21 C -0.186 4.186 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.009 1.009 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.022 0.978 29 H 0.344 0.656 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -21.489 1.696 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.323 5.323 13 C -0.037 4.037 14 C -0.166 4.166 15 H 0.126 0.874 16 C -0.202 4.202 17 C -0.133 4.133 18 H 0.134 0.866 19 C -0.149 4.149 20 C -0.204 4.204 21 C -0.223 4.223 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.347 -21.377 1.008 21.661 hybrid contribution -0.328 1.081 0.821 1.397 sum 3.019 -20.296 1.829 20.600 Atomic orbital electron populations 1.70097 1.07839 1.27876 1.51643 1.26020 0.95816 1.03476 0.94659 0.85470 0.78255 0.77901 0.79242 1.19169 1.20736 1.19057 1.21683 0.93581 0.92416 1.50659 0.92184 1.18974 0.94439 0.93156 0.94727 1.21376 0.98017 0.92876 1.00747 1.21810 0.94008 0.90376 0.99452 1.60464 1.19995 1.01571 1.50306 1.21529 0.94697 0.87092 1.00351 1.22264 1.00258 0.90311 1.03798 0.87426 1.23137 1.02951 1.02949 0.91190 1.21898 0.93824 0.96318 1.01226 0.86629 1.21740 0.93316 1.05758 0.94067 1.23071 1.03453 0.93003 1.00867 1.22998 1.01609 0.96221 1.01482 0.92736 0.99114 0.99060 0.92997 0.92941 0.92351 0.95965 0.83827 0.92159 0.94232 0.87737 0.89150 0.87903 0.87932 0.88109 0.89271 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.80 16 11 C 0.07 2.62 5.68 86.30 0.49 3.11 16 12 N -0.69 -20.57 6.50 -513.88 -3.34 -23.91 16 13 C 0.09 2.29 4.92 86.30 0.42 2.72 16 14 C -0.15 -3.01 5.94 -10.79 -0.06 -3.07 16 15 H 0.11 2.14 8.13 -2.38 -0.02 2.12 16 16 C -0.17 -2.99 9.90 30.59 0.30 -2.69 16 17 C -0.11 -1.94 5.87 -10.79 -0.06 -2.00 16 18 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 19 C -0.13 -2.22 5.25 -10.79 -0.06 -2.28 16 20 C -0.17 -2.42 10.25 30.62 0.31 -2.11 16 21 C -0.19 -3.30 8.44 30.62 0.26 -3.04 16 22 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.34 9.36 8.72 -89.70 -0.78 8.58 16 30 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 31 H 0.04 0.98 5.64 -2.39 -0.01 0.97 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.72 8.03 -2.38 -0.02 1.70 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.70 7.32 -2.38 -0.02 1.68 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.92 311.32 1.81 -62.11 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.22 Total: 15.57 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 2.62 Total: -43.08 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.06 Total: -81.62 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.92 1.81 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698885093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.389 kcal (2) G-P(sol) polarization free energy of solvation -63.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds