Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99588 * 3 2 1 5 5 H 1.48491 * 109.47369 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47174 * 149.99914 * 3 2 1 7 7 C 1.37882 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46983 * 180.02562 * 11 10 9 13 13 N 1.46908 * 109.47062 * 177.28782 * 12 11 10 14 14 C 1.47164 * 110.99755 * 302.54358 * 13 12 11 15 15 C 1.52988 * 108.58814 * 199.59309 * 14 13 12 16 16 C 1.52985 * 109.63405 * 305.87751 * 15 14 13 17 17 H 1.09005 * 115.38949 * 232.08547 * 16 15 14 18 18 C 1.53603 * 115.98334 * 89.09336 * 16 15 14 19 19 C 1.52369 * 59.74749 * 249.56963 * 18 16 15 20 20 H 1.08995 * 116.26164 * 253.89970 * 19 18 16 21 21 C 1.46737 * 110.99697 * 65.64330 * 13 12 11 22 22 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47649 * 300.00221 * 9 7 2 24 24 H 1.09005 * 109.47468 * 60.00071 * 9 7 2 25 25 H 1.09000 * 109.46810 * 299.99658 * 10 9 7 26 26 H 1.08995 * 109.47483 * 59.99930 * 10 9 7 27 27 H 1.09000 * 109.46620 * 299.99358 * 11 10 9 28 28 H 1.08995 * 109.47300 * 59.99402 * 11 10 9 29 29 H 1.09004 * 109.47269 * 297.28285 * 12 11 10 30 30 H 1.08997 * 109.47817 * 57.28666 * 12 11 10 31 31 H 1.08995 * 109.61945 * 319.32315 * 14 13 12 32 32 H 1.09005 * 109.61802 * 79.86453 * 14 13 12 33 33 H 1.08996 * 109.44366 * 185.83082 * 15 14 13 34 34 H 1.08999 * 109.41712 * 65.90841 * 15 14 13 35 35 H 1.08999 * 117.52015 * 142.15579 * 18 16 15 36 36 H 1.08994 * 117.56682 * 356.96647 * 18 16 15 37 37 H 1.09000 * 109.30589 * 300.47347 * 21 13 12 38 38 H 1.09003 * 109.30356 * 60.06621 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 7 1.7410 -7.4213 0.0644 14 6 0.8787 -7.4723 1.2558 15 6 0.5338 -8.9343 1.5459 16 6 -0.0690 -9.5780 0.2958 17 1 -1.0229 -10.0842 0.4444 18 6 0.9296 -10.2219 -0.6777 19 6 0.1876 -8.9498 -1.0688 20 1 -0.6124 -9.0636 -1.8002 21 6 0.9454 -7.6319 -1.1504 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 0.8896 24 1 0.6240 -2.5567 -0.8903 25 1 2.8718 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 0.8534 -5.0451 0.8887 28 1 0.8538 -5.0446 -0.8913 29 1 3.0693 -6.1200 -0.9135 30 1 3.1321 -6.0654 0.8646 31 1 1.4066 -7.0448 2.1082 32 1 -0.0366 -6.9104 1.0695 33 1 -0.1871 -8.9820 2.3620 34 1 1.4392 -9.4708 1.8296 35 1 0.6305 -11.1495 -1.1656 36 1 1.9904 -10.1343 -0.4433 37 1 0.2341 -6.8136 -1.2617 38 1 1.6079 -7.6537 -2.0158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699156511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = 1.978443 kcal Electronic energy + Delta-G solvation = -15231.722972 eV Core-core repulsion = 12880.695608 eV Total energy + Delta-G solvation = -2351.027363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76528 -36.27468 -33.90079 -32.03501 -31.16607 -28.53541 -26.09060 -24.31103 -23.28964 -21.46484 -21.10987 -20.17404 -18.11470 -16.45313 -16.19068 -15.47683 -14.72341 -14.46555 -14.44798 -13.96501 -13.64486 -12.81380 -12.49685 -12.29983 -12.09771 -11.79954 -11.66860 -11.59320 -11.23325 -10.92778 -10.62606 -10.52002 -10.41878 -10.35262 -10.00159 -9.74720 -9.60178 -9.37270 -9.06148 -8.33139 -8.04018 -5.98040 -4.00406 3.32728 3.38748 3.42382 3.66806 4.06798 4.47376 4.59846 4.80153 4.90972 5.06713 5.27860 5.33696 5.37438 5.40189 5.48206 5.60155 5.70543 5.76984 5.80913 5.88374 5.90650 6.00003 6.01348 6.14723 6.17330 6.27323 6.32300 6.51632 6.76354 6.93321 7.14651 7.19171 7.25489 7.70190 7.85458 8.02584 8.45800 9.07154 9.63611 11.13312 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.065267 B = 0.004375 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.904322 B = 6399.152221 C = 6436.517963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.154 4.154 12 C 0.053 3.947 13 N -0.535 5.535 14 C 0.050 3.950 15 C -0.083 4.083 16 C -0.150 4.150 17 H 0.097 0.903 18 C -0.168 4.168 19 C -0.145 4.145 20 H 0.100 0.900 21 C 0.079 3.921 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -18.457 0.222 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.193 4.193 12 C -0.074 4.074 13 N -0.258 5.258 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.168 4.168 17 H 0.116 0.884 18 C -0.205 4.205 19 C -0.163 4.163 20 H 0.118 0.882 21 C -0.049 4.049 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.131 -18.739 0.262 18.775 hybrid contribution -0.306 1.655 -0.159 1.690 sum 0.825 -17.084 0.103 17.104 Atomic orbital electron populations 1.69967 1.06083 1.26526 1.51057 1.25037 0.94840 0.99258 0.95387 0.86604 0.79867 0.83507 0.78092 1.20675 1.21231 1.19864 1.21293 0.93039 0.91199 1.50318 0.92727 1.19096 0.94042 0.91529 0.96959 1.21548 0.98957 0.93806 1.00156 1.22289 0.99075 0.96423 1.01510 1.22323 0.96255 0.86312 1.02521 1.62512 1.27383 1.33754 1.02163 1.22147 0.96129 0.96106 0.93467 1.21129 1.00158 0.95459 0.95377 1.22258 0.99601 1.03828 0.91151 0.88443 1.23033 0.98543 0.95449 1.03493 1.21989 1.01887 0.94280 0.98154 0.88227 1.21428 0.95658 0.94554 0.93282 0.93056 0.96851 0.96867 0.93485 0.93451 0.92413 0.92545 0.90985 0.90771 0.90730 0.93874 0.91547 0.91172 0.89672 0.88060 0.93595 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.15 -2.65 4.56 -26.73 -0.12 -2.77 16 12 C 0.05 0.77 5.28 -3.82 -0.02 0.75 16 13 N -0.53 -7.09 4.66 -235.03 -1.10 -8.19 16 14 C 0.05 0.63 4.40 -3.69 -0.02 0.61 16 15 C -0.08 -0.89 6.09 -26.74 -0.16 -1.06 16 16 C -0.15 -1.58 6.27 -90.62 -0.57 -2.14 16 17 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.17 -1.71 9.78 -26.74 -0.26 -1.97 16 19 C -0.14 -1.60 6.08 -91.63 -0.56 -2.16 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.08 1.00 5.14 -4.30 -0.02 0.97 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.02 6.68 -51.93 -0.35 0.67 16 28 H 0.06 1.00 6.66 -51.93 -0.35 0.65 16 29 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 31 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.04 0.59 7.24 -51.93 -0.38 0.22 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.63 6.47 -51.93 -0.34 0.30 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -30.12 297.87 -10.16 -40.28 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.85 Total: -3.19 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.42 Total: -23.59 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.36 Total: -34.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.12 -10.16 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699156511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds