Wall clock time and date at job start Mon Mar 30 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99588 * 3 2 1 5 5 H 1.48491 * 109.47369 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47174 * 149.99914 * 3 2 1 7 7 C 1.37882 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46983 * 180.02562 * 11 10 9 13 13 N 1.46908 * 109.47062 * 177.28782 * 12 11 10 14 14 C 1.47164 * 110.99755 * 302.54358 * 13 12 11 15 15 C 1.52988 * 108.58814 * 199.59309 * 14 13 12 16 16 C 1.52985 * 109.63405 * 305.87751 * 15 14 13 17 17 H 1.09005 * 115.38949 * 232.08547 * 16 15 14 18 18 C 1.53603 * 115.98334 * 89.09336 * 16 15 14 19 19 C 1.52369 * 59.74749 * 249.56963 * 18 16 15 20 20 H 1.08995 * 116.26164 * 253.89970 * 19 18 16 21 21 C 1.46737 * 110.99697 * 65.64330 * 13 12 11 22 22 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47649 * 300.00221 * 9 7 2 24 24 H 1.09005 * 109.47468 * 60.00071 * 9 7 2 25 25 H 1.09000 * 109.46810 * 299.99658 * 10 9 7 26 26 H 1.08995 * 109.47483 * 59.99930 * 10 9 7 27 27 H 1.09000 * 109.46620 * 299.99358 * 11 10 9 28 28 H 1.08995 * 109.47300 * 59.99402 * 11 10 9 29 29 H 1.09004 * 109.47269 * 297.28285 * 12 11 10 30 30 H 1.08997 * 109.47817 * 57.28666 * 12 11 10 31 31 H 1.08995 * 109.61945 * 319.32315 * 14 13 12 32 32 H 1.09005 * 109.61802 * 79.86453 * 14 13 12 33 33 H 1.08996 * 109.44366 * 185.83082 * 15 14 13 34 34 H 1.08999 * 109.41712 * 65.90841 * 15 14 13 35 35 H 1.08999 * 117.52015 * 142.15579 * 18 16 15 36 36 H 1.08994 * 117.56682 * 356.96647 * 18 16 15 37 37 H 1.09000 * 109.30589 * 300.47347 * 21 13 12 38 38 H 1.09003 * 109.30356 * 60.06621 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 7 1.7410 -7.4213 0.0644 14 6 0.8787 -7.4723 1.2558 15 6 0.5338 -8.9343 1.5459 16 6 -0.0690 -9.5780 0.2958 17 1 -1.0229 -10.0842 0.4444 18 6 0.9296 -10.2219 -0.6777 19 6 0.1876 -8.9498 -1.0688 20 1 -0.6124 -9.0636 -1.8002 21 6 0.9454 -7.6319 -1.1504 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 0.8896 24 1 0.6240 -2.5567 -0.8903 25 1 2.8718 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 0.8534 -5.0451 0.8887 28 1 0.8538 -5.0446 -0.8913 29 1 3.0693 -6.1200 -0.9135 30 1 3.1321 -6.0654 0.8646 31 1 1.4066 -7.0448 2.1082 32 1 -0.0366 -6.9104 1.0695 33 1 -0.1871 -8.9820 2.3620 34 1 1.4392 -9.4708 1.8296 35 1 0.6305 -11.1495 -1.1656 36 1 1.9904 -10.1343 -0.4433 37 1 0.2341 -6.8136 -1.2617 38 1 1.6079 -7.6537 -2.0158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699156511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:10 Heat of formation + Delta-G solvation = -15.055272 kcal Electronic energy + Delta-G solvation = -15232.461609 eV Core-core repulsion = 12880.695608 eV Total energy + Delta-G solvation = -2351.766001 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.73501 -37.49584 -35.71203 -33.86070 -32.18224 -30.17566 -27.52307 -25.68435 -24.64423 -22.64581 -22.14482 -21.89026 -19.12688 -18.41638 -17.38325 -16.65645 -16.52462 -15.85366 -15.65385 -15.10617 -14.76058 -14.46130 -13.99171 -13.61746 -13.50191 -13.27152 -12.98182 -12.86318 -12.67964 -12.40471 -12.27403 -12.06549 -11.88243 -11.50719 -11.39898 -11.33126 -11.18827 -10.76571 -10.58802 -10.56992 -9.20654 -8.22032 -6.34231 1.38438 1.40237 1.51541 2.39418 2.81105 3.03793 3.10543 3.73410 3.92400 4.02402 4.03624 4.10428 4.25607 4.41184 4.43539 4.46794 4.55537 4.62559 4.74934 4.82291 4.91468 4.94471 4.96888 5.01578 5.09029 5.16634 5.18559 5.26975 5.31295 5.32880 5.44246 5.51364 5.72589 5.83327 6.11838 6.13596 6.23144 6.83294 7.35558 8.89762 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.065267 B = 0.004375 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.904322 B = 6399.152221 C = 6436.517963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.141 4.141 12 C 0.063 3.937 13 N -0.531 5.531 14 C 0.046 3.954 15 C -0.080 4.080 16 C -0.154 4.154 17 H 0.111 0.889 18 C -0.157 4.157 19 C -0.157 4.157 20 H 0.109 0.891 21 C 0.077 3.923 22 H 0.264 0.736 23 H -0.014 1.014 24 H -0.015 1.015 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -19.227 0.309 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.180 4.180 12 C -0.065 4.065 13 N -0.254 5.254 14 C -0.082 4.082 15 C -0.118 4.118 16 C -0.172 4.172 17 H 0.129 0.871 18 C -0.194 4.194 19 C -0.175 4.175 20 H 0.127 0.873 21 C -0.051 4.051 22 H 0.072 0.928 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.255 -19.530 0.348 19.663 hybrid contribution -0.702 1.887 -0.187 2.022 sum 1.553 -17.643 0.161 17.712 Atomic orbital electron populations 1.70106 1.07940 1.27809 1.51739 1.26039 0.95789 1.03561 0.94625 0.85412 0.78681 0.78180 0.78578 1.19668 1.20660 1.18576 1.21747 0.93623 0.92458 1.50532 0.92060 1.19026 0.94514 0.93591 0.94270 1.21365 0.97858 0.93384 1.00641 1.22140 0.99235 0.95860 1.00760 1.22221 0.95554 0.85514 1.03250 1.62583 1.27663 1.32443 1.02684 1.22208 0.95266 0.97513 0.93172 1.21123 1.00758 0.93846 0.96076 1.22376 1.00407 1.03752 0.90675 0.87084 1.23040 0.97949 0.95506 1.02884 1.22005 1.02511 0.93889 0.99132 0.87284 1.21453 0.95433 0.95093 0.93134 0.92760 0.99555 0.99625 0.92919 0.92843 0.93159 0.93410 0.90245 0.90030 0.90703 0.95508 0.90183 0.90812 0.87925 0.88879 0.95352 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.29 21.45 0.28 -58.07 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.95 5.15 30.60 0.16 -3.80 16 11 C -0.14 -4.89 4.56 30.59 0.14 -4.75 16 12 C 0.06 1.74 5.28 86.30 0.46 2.19 16 13 N -0.53 -13.56 4.66 -897.49 -4.19 -17.74 16 14 C 0.05 1.14 4.40 86.25 0.38 1.52 16 15 C -0.08 -1.58 6.09 30.59 0.19 -1.40 16 16 C -0.15 -2.92 6.27 -10.79 -0.07 -2.99 16 17 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 18 C -0.16 -2.83 9.78 30.59 0.30 -2.54 16 19 C -0.16 -3.25 6.08 -11.45 -0.07 -3.32 16 20 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 21 C 0.08 1.89 5.14 86.08 0.44 2.34 16 22 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 23 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 24 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.80 6.68 -2.39 -0.02 1.79 16 28 H 0.05 1.73 6.66 -2.39 -0.02 1.71 16 29 H 0.08 2.10 8.12 -2.39 -0.02 2.09 16 30 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 31 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 32 H 0.03 0.74 7.24 -2.38 -0.02 0.72 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.41 8.07 -2.39 -0.02 1.40 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 0.79 6.47 -2.39 -0.02 0.78 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.50 297.87 1.88 -62.62 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.99 Total: 9.00 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 2.77 Total: -42.76 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -3.90 Total: -75.82 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.50 1.88 -62.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699156511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.562 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds