Wall clock time and date at job start Mon Mar 30 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.55368 * 2 1 4 4 C 1.52995 * 109.46987 * 34.32764 * 3 2 1 5 5 N 1.46902 * 109.47082 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00131 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47533 * 185.35114 * 6 5 4 8 8 C 1.50698 * 115.55000 * 65.03967 * 7 6 5 9 9 H 1.07998 * 120.00125 * 265.45199 * 8 7 6 10 10 C 1.37879 * 119.99631 * 85.45419 * 8 7 6 11 11 N 1.31517 * 120.00193 * 353.59750 * 10 8 7 12 12 Si 1.86804 * 120.00050 * 173.59548 * 10 8 7 13 13 H 1.48498 * 109.46868 * 60.00206 * 12 10 8 14 14 H 1.48495 * 109.46870 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46895 * 300.00027 * 12 10 8 16 16 C 1.53001 * 117.49382 * 279.37839 * 7 6 5 17 17 C 1.52998 * 117.49781 * 210.72105 * 7 6 5 18 18 C 1.53004 * 117.51813 * 145.69729 * 2 1 3 19 19 C 1.53002 * 60.00035 * 107.48017 * 18 2 1 20 20 H 1.08998 * 109.46672 * 85.58181 * 1 2 3 21 21 H 1.09000 * 109.47372 * 205.58561 * 1 2 3 22 22 H 1.09003 * 109.46804 * 325.59012 * 1 2 3 23 23 H 1.09000 * 109.46867 * 274.32747 * 3 2 1 24 24 H 1.08996 * 109.47292 * 154.32717 * 3 2 1 25 25 H 1.09003 * 109.46938 * 299.99749 * 4 3 2 26 26 H 1.09000 * 109.47331 * 60.00267 * 4 3 2 27 27 H 1.00900 * 110.99702 * 303.94872 * 5 4 3 28 28 H 1.09009 * 109.47197 * 305.34418 * 6 5 4 29 29 H 1.09000 * 109.47432 * 65.34363 * 6 5 4 30 30 H 0.97001 * 120.00145 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.49795 * 359.97438 * 16 7 6 32 32 H 1.08995 * 117.49952 * 145.01638 * 16 7 6 33 33 H 1.09007 * 117.49556 * 214.97635 * 17 7 6 34 34 H 1.08992 * 117.50190 * 359.96802 * 17 7 6 35 35 H 1.08990 * 117.50261 * 214.96841 * 18 2 1 36 36 H 1.09003 * 117.49171 * 359.97438 * 18 2 1 37 37 H 1.08997 * 117.50166 * 252.51693 * 19 18 2 38 38 H 1.09001 * 117.49845 * 107.48928 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3352 2.3543 0.8134 5 7 1.9686 3.6797 0.8129 6 6 1.1742 4.6431 1.5868 7 6 1.7913 6.0368 1.4535 8 6 1.7622 6.6308 0.0688 9 1 2.6151 6.5199 -0.5844 10 6 0.6467 7.3159 -0.3641 11 7 -0.4376 7.3440 0.3798 12 14 0.6754 8.2041 -2.0072 13 1 0.9402 7.2269 -3.0935 14 1 -0.6376 8.8578 -2.2394 15 1 1.7460 9.2331 -1.9949 16 6 2.9972 6.3628 2.3368 17 6 1.6355 6.9944 2.6365 18 6 2.2369 -1.1209 0.7647 19 6 2.2364 -1.1208 -0.7653 20 1 -0.3632 0.0792 -1.0246 21 1 -0.3634 -0.9269 0.4438 22 1 -0.3633 0.8479 0.5808 23 1 2.2767 1.7416 -1.0248 24 1 3.1823 1.3087 0.4452 25 1 0.3429 2.4260 0.3682 26 1 1.2485 1.9931 1.8382 27 1 2.9141 3.6288 1.1613 28 1 0.1527 4.6602 1.2066 29 1 1.1665 4.3479 2.6360 30 1 -1.2222 7.8263 0.0754 31 1 3.3507 5.5845 3.0132 32 1 3.7693 7.0072 1.9166 33 1 1.5122 8.0542 2.4133 34 1 1.0930 6.6318 3.5095 35 1 3.1720 -0.8750 1.2677 36 1 1.6118 -1.8584 1.2683 37 1 1.6111 -1.8583 -1.2685 38 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700603973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:36 Heat of formation + Delta-G solvation = 37.190449 kcal Electronic energy + Delta-G solvation = -15296.832822 eV Core-core repulsion = 12947.332366 eV Total energy + Delta-G solvation = -2349.500456 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.49310 -36.90304 -34.40399 -31.78068 -29.95262 -27.93063 -25.58206 -24.20965 -22.49449 -21.85590 -20.90828 -19.07116 -18.53103 -16.11627 -15.43562 -15.08764 -14.73961 -14.42759 -13.85262 -13.41056 -13.02034 -12.99219 -12.74095 -12.12332 -12.00065 -11.49468 -11.28758 -11.23294 -10.95793 -10.86448 -10.74457 -10.59907 -10.40173 -10.12422 -9.95807 -9.52359 -9.33899 -8.73772 -8.30891 -7.99845 -7.45364 -5.89895 -3.91055 3.40080 3.43611 3.47301 3.76421 4.52161 4.59611 4.80075 4.92994 5.00574 5.27619 5.40190 5.51905 5.54640 5.60158 5.71132 5.82242 5.86531 5.94379 5.96183 6.10349 6.16669 6.22457 6.29094 6.38986 6.48879 6.53548 6.57863 6.71602 6.79218 6.96377 7.17396 7.52897 7.65306 8.02789 8.04820 8.25362 8.62597 9.07640 9.71619 11.20156 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.006280 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.877596 B = 4457.496059 C = 4951.391043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C -0.079 4.079 4 C 0.062 3.938 5 N -0.671 5.671 6 C 0.108 3.892 7 C 0.052 3.948 8 C -0.469 4.469 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.888 3.112 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.279 1.279 16 C -0.216 4.216 17 C -0.159 4.159 18 C -0.180 4.180 19 C -0.179 4.179 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.327 0.673 28 H 0.075 0.925 29 H -0.008 1.008 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -13.155 0.986 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.120 4.120 3 C -0.117 4.117 4 C -0.068 4.068 5 N -0.301 5.301 6 C -0.020 4.020 7 C 0.051 3.949 8 C -0.507 4.507 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.205 1.205 16 C -0.254 4.254 17 C -0.197 4.197 18 C -0.217 4.217 19 C -0.216 4.216 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.144 0.856 28 H 0.093 0.907 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.434 -12.888 0.381 13.122 hybrid contribution 0.107 0.169 0.116 0.231 sum 2.541 -12.720 0.497 12.981 Atomic orbital electron populations 1.21476 0.92196 1.02074 1.02187 1.21522 0.94921 0.91213 1.04338 1.21089 0.97789 0.91115 1.01678 1.21988 0.98637 0.89235 0.96908 1.60281 1.04915 1.05722 1.59134 1.21525 0.98035 0.91567 0.90901 1.18834 0.93552 0.90755 0.91712 1.20270 1.00789 1.32451 0.97147 0.92331 1.24938 0.95407 0.96378 0.96767 1.70002 1.02487 1.42333 1.37687 0.86728 0.76868 0.80023 0.84744 1.20271 1.21553 1.20468 1.22989 0.92594 1.03770 1.06005 1.22514 0.97521 0.99601 1.00074 1.23145 1.02463 1.01729 0.94321 1.23007 1.02573 1.01746 0.94243 0.92191 0.93008 0.91015 0.90618 0.92326 0.90937 0.96653 0.85604 0.90652 0.98950 0.93312 0.92255 0.90545 0.90087 0.92205 0.89080 0.89241 0.89143 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.49 37.16 0.35 -1.09 16 2 C -0.12 -1.46 2.47 -154.50 -0.38 -1.84 16 3 C -0.08 -1.12 5.66 -26.73 -0.15 -1.27 16 4 C 0.06 1.03 4.68 -3.83 -0.02 1.01 16 5 N -0.67 -13.43 6.38 -113.78 -0.73 -14.16 16 6 C 0.11 2.48 5.51 -3.82 -0.02 2.45 16 7 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 8 C -0.47 -12.98 8.74 -34.44 -0.30 -13.28 16 9 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 10 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 11 N -0.89 -25.56 12.92 55.43 0.72 -24.85 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.22 -4.79 9.96 -26.69 -0.27 -5.05 16 17 C -0.16 -3.82 9.41 -26.69 -0.25 -4.07 16 18 C -0.18 -1.93 9.82 -26.73 -0.26 -2.19 16 19 C -0.18 -1.91 9.97 -26.73 -0.27 -2.17 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 22 H 0.07 0.91 5.59 -51.93 -0.29 0.62 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 25 H 0.07 1.27 6.45 -51.93 -0.33 0.93 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.33 6.13 8.79 -39.29 -0.35 5.79 16 28 H 0.08 1.92 8.13 -51.92 -0.42 1.50 16 29 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -28.38 311.15 -9.06 -37.45 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.82 Total: 4.87 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.90 Total: -24.67 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.01 Total: -39.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.38 -9.06 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700603973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.636 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds