Wall clock time and date at job start Mon Mar 30 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.55368 * 2 1 4 4 C 1.52995 * 109.46987 * 34.32764 * 3 2 1 5 5 N 1.46902 * 109.47082 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00131 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47533 * 185.35114 * 6 5 4 8 8 C 1.50698 * 115.55000 * 65.03967 * 7 6 5 9 9 H 1.07998 * 120.00125 * 265.45199 * 8 7 6 10 10 C 1.37879 * 119.99631 * 85.45419 * 8 7 6 11 11 N 1.31517 * 120.00193 * 353.59750 * 10 8 7 12 12 Si 1.86804 * 120.00050 * 173.59548 * 10 8 7 13 13 H 1.48498 * 109.46868 * 60.00206 * 12 10 8 14 14 H 1.48495 * 109.46870 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46895 * 300.00027 * 12 10 8 16 16 C 1.53001 * 117.49382 * 279.37839 * 7 6 5 17 17 C 1.52998 * 117.49781 * 210.72105 * 7 6 5 18 18 C 1.53004 * 117.51813 * 145.69729 * 2 1 3 19 19 C 1.53002 * 60.00035 * 107.48017 * 18 2 1 20 20 H 1.08998 * 109.46672 * 85.58181 * 1 2 3 21 21 H 1.09000 * 109.47372 * 205.58561 * 1 2 3 22 22 H 1.09003 * 109.46804 * 325.59012 * 1 2 3 23 23 H 1.09000 * 109.46867 * 274.32747 * 3 2 1 24 24 H 1.08996 * 109.47292 * 154.32717 * 3 2 1 25 25 H 1.09003 * 109.46938 * 299.99749 * 4 3 2 26 26 H 1.09000 * 109.47331 * 60.00267 * 4 3 2 27 27 H 1.00900 * 110.99702 * 303.94872 * 5 4 3 28 28 H 1.09009 * 109.47197 * 305.34418 * 6 5 4 29 29 H 1.09000 * 109.47432 * 65.34363 * 6 5 4 30 30 H 0.97001 * 120.00145 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.49795 * 359.97438 * 16 7 6 32 32 H 1.08995 * 117.49952 * 145.01638 * 16 7 6 33 33 H 1.09007 * 117.49556 * 214.97635 * 17 7 6 34 34 H 1.08992 * 117.50190 * 359.96802 * 17 7 6 35 35 H 1.08990 * 117.50261 * 214.96841 * 18 2 1 36 36 H 1.09003 * 117.49171 * 359.97438 * 18 2 1 37 37 H 1.08997 * 117.50166 * 252.51693 * 19 18 2 38 38 H 1.09001 * 117.49845 * 107.48928 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3352 2.3543 0.8134 5 7 1.9686 3.6797 0.8129 6 6 1.1742 4.6431 1.5868 7 6 1.7913 6.0368 1.4535 8 6 1.7622 6.6308 0.0688 9 1 2.6151 6.5199 -0.5844 10 6 0.6467 7.3159 -0.3641 11 7 -0.4376 7.3440 0.3798 12 14 0.6754 8.2041 -2.0072 13 1 0.9402 7.2269 -3.0935 14 1 -0.6376 8.8578 -2.2394 15 1 1.7460 9.2331 -1.9949 16 6 2.9972 6.3628 2.3368 17 6 1.6355 6.9944 2.6365 18 6 2.2369 -1.1209 0.7647 19 6 2.2364 -1.1208 -0.7653 20 1 -0.3632 0.0792 -1.0246 21 1 -0.3634 -0.9269 0.4438 22 1 -0.3633 0.8479 0.5808 23 1 2.2767 1.7416 -1.0248 24 1 3.1823 1.3087 0.4452 25 1 0.3429 2.4260 0.3682 26 1 1.2485 1.9931 1.8382 27 1 2.9141 3.6288 1.1613 28 1 0.1527 4.6602 1.2066 29 1 1.1665 4.3479 2.6360 30 1 -1.2222 7.8263 0.0754 31 1 3.3507 5.5845 3.0132 32 1 3.7693 7.0072 1.9166 33 1 1.5122 8.0542 2.4133 34 1 1.0930 6.6318 3.5095 35 1 3.1720 -0.8750 1.2677 36 1 1.6118 -1.8584 1.2683 37 1 1.6111 -1.8583 -1.2685 38 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700603973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:36 Heat of formation + Delta-G solvation = 21.673495 kcal Electronic energy + Delta-G solvation = -15297.505688 eV Core-core repulsion = 12947.332366 eV Total energy + Delta-G solvation = -2350.173322 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53249 -38.65096 -35.93183 -33.89094 -31.22283 -28.97180 -27.60370 -25.88493 -23.50169 -23.14769 -22.68427 -20.91993 -19.63619 -18.02744 -16.84258 -16.43663 -16.38711 -15.86802 -15.48113 -14.94305 -14.57330 -14.20787 -14.05120 -13.66991 -13.23913 -12.94450 -12.85816 -12.82076 -12.53514 -12.33022 -12.29590 -12.08074 -12.01305 -11.85633 -11.33744 -10.90754 -10.72782 -10.43069 -10.34600 -9.90713 -9.04709 -8.02714 -6.09009 1.44183 1.45216 1.52116 2.48723 2.88316 3.26219 3.28192 3.63857 3.85932 3.93051 4.09177 4.22563 4.32388 4.44215 4.49783 4.62676 4.68416 4.73332 4.79374 4.81286 4.93288 4.94220 4.99696 5.05827 5.07690 5.15192 5.23855 5.28957 5.30937 5.34858 5.45832 5.64705 5.75776 5.88754 6.37292 6.52897 6.77733 6.94355 7.56064 9.06399 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.006280 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.877596 B = 4457.496059 C = 4951.391043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C -0.069 4.069 4 C 0.067 3.933 5 N -0.683 5.683 6 C 0.124 3.876 7 C 0.023 3.977 8 C -0.481 4.481 9 H 0.048 0.952 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.945 3.055 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.187 4.187 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.171 4.171 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.337 0.663 28 H 0.039 0.961 29 H 0.005 0.995 30 H 0.256 0.744 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -14.527 1.033 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C -0.107 4.107 4 C -0.062 4.062 5 N -0.314 5.314 6 C -0.005 4.005 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.066 0.934 10 C -0.178 4.178 11 N -0.553 5.553 12 Si 0.772 3.228 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.224 4.224 17 C -0.204 4.204 18 C -0.208 4.208 19 C -0.208 4.208 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.154 0.846 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.449 -14.268 0.427 14.686 hybrid contribution -0.177 0.571 0.114 0.608 sum 3.272 -13.698 0.541 14.093 Atomic orbital electron populations 1.21453 0.92162 1.02245 1.01957 1.21461 0.95036 0.90609 1.06851 1.20964 0.97913 0.91664 1.00185 1.21981 0.98269 0.88178 0.97760 1.60183 1.05307 1.06983 1.58883 1.21165 0.96287 0.91452 0.91629 1.18960 0.96152 0.91785 0.90919 1.20516 1.00332 1.32574 0.98475 0.93415 1.25600 0.95201 0.97216 0.99822 1.70109 1.02870 1.43121 1.39172 0.85823 0.76950 0.78976 0.81094 1.20125 1.21252 1.19847 1.22974 0.91366 1.03464 1.04616 1.22434 0.99532 0.98224 1.00254 1.23224 1.02395 1.00661 0.94472 1.23081 1.02476 1.00693 0.94519 0.92416 0.91403 0.92517 0.92171 0.91424 0.92385 0.95751 0.84577 0.94211 0.97702 0.93509 0.89267 0.90533 0.92426 0.91087 0.88689 0.88034 0.87969 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.49 71.98 0.68 -2.03 16 2 C -0.14 -3.15 2.47 -52.18 -0.13 -3.28 16 3 C -0.07 -1.89 5.66 30.59 0.17 -1.71 16 4 C 0.07 2.19 4.68 86.30 0.40 2.60 16 5 N -0.68 -26.97 6.38 -513.88 -3.28 -30.24 16 6 C 0.12 5.65 5.51 86.31 0.48 6.13 16 7 C 0.02 1.12 1.55 -52.93 -0.08 1.03 16 8 C -0.48 -26.81 8.74 25.60 0.22 -26.58 16 9 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 10 C 0.02 1.15 5.39 84.65 0.46 1.60 16 11 N -0.91 -53.50 12.92 21.45 0.28 -53.22 16 12 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 16 C -0.19 -7.96 9.96 30.62 0.30 -7.65 16 17 C -0.17 -7.92 9.41 30.62 0.29 -7.64 16 18 C -0.17 -3.19 9.82 30.60 0.30 -2.89 16 19 C -0.17 -3.22 9.97 30.60 0.31 -2.91 16 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 22 H 0.06 1.42 5.59 -2.39 -0.01 1.41 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.69 7.90 -2.39 -0.02 1.68 16 25 H 0.06 2.06 6.45 -2.39 -0.02 2.04 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.34 12.12 8.79 -89.69 -0.79 11.33 16 28 H 0.04 2.07 8.13 -2.38 -0.02 2.05 16 29 H 0.01 0.21 8.09 -2.39 -0.02 0.19 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 36 H 0.10 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -59.98 311.15 2.65 -57.33 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.22 Total: 22.59 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 3.40 Total: -43.33 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -3.00 Total: -83.47 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -59.98 2.65 -57.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700603973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.004 kcal (2) G-P(sol) polarization free energy of solvation -59.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds