Wall clock time and date at job start Mon Mar 30 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.56099 * 2 1 4 4 C 1.53004 * 117.49539 * 214.30926 * 2 1 3 5 5 C 1.53002 * 117.49640 * 145.68935 * 2 1 3 6 6 C 1.53004 * 117.49568 * 359.97438 * 5 2 1 7 7 N 1.46896 * 117.49825 * 214.98080 * 5 2 1 8 8 C 1.46902 * 110.99769 * 185.50473 * 7 5 2 9 9 C 1.52997 * 109.46955 * 174.15668 * 8 7 5 10 10 C 1.50708 * 115.54906 * 54.67558 * 9 8 7 11 11 H 1.08001 * 119.99966 * 215.53886 * 10 9 8 12 12 C 1.37876 * 119.99771 * 35.53328 * 10 9 8 13 13 N 1.31511 * 120.00166 * 11.54904 * 12 10 9 14 14 Si 1.86799 * 119.99575 * 191.54555 * 12 10 9 15 15 H 1.48508 * 109.46919 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47199 * 299.99870 * 14 12 10 17 17 H 1.48499 * 109.47364 * 60.00359 * 14 12 10 18 18 C 1.52995 * 117.50206 * 200.34153 * 9 8 7 19 19 C 1.53005 * 117.50126 * 269.00649 * 9 8 7 20 20 H 1.08993 * 109.47223 * 274.31570 * 1 2 3 21 21 H 1.09003 * 109.46543 * 34.31129 * 1 2 3 22 22 H 1.09004 * 109.47149 * 154.30789 * 1 2 3 23 23 H 1.09003 * 109.46547 * 210.44176 * 3 2 1 24 24 H 1.08998 * 109.47136 * 330.43944 * 3 2 1 25 25 H 1.09000 * 109.47142 * 90.44769 * 3 2 1 26 26 H 1.08996 * 117.49596 * 145.02180 * 4 2 1 27 27 H 1.08996 * 117.49755 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.47164 * 299.90858 * 6 5 2 29 29 H 1.08998 * 109.47142 * 59.91776 * 6 5 2 30 30 H 1.08998 * 109.46752 * 179.91115 * 6 5 2 31 31 H 1.00904 * 110.99763 * 309.45652 * 7 5 2 32 32 H 1.09001 * 109.46888 * 54.16391 * 8 7 5 33 33 H 1.08997 * 109.47137 * 294.15822 * 8 7 5 34 34 H 0.97001 * 119.99930 * 174.97690 * 13 12 10 35 35 H 1.09000 * 117.50393 * 215.00451 * 18 9 8 36 36 H 1.09003 * 117.49467 * 0.02714 * 18 9 8 37 37 H 1.08992 * 117.49862 * 359.97239 * 19 9 8 38 38 H 1.08999 * 117.49605 * 144.97765 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2365 -1.1210 0.7650 6 6 1.3587 -2.1558 1.4719 7 7 3.4966 -0.7898 1.4433 8 6 4.1160 -1.9909 2.0191 9 6 5.4907 -1.6332 2.5876 10 6 5.5075 -0.5043 3.5860 11 1 6.3417 0.1810 3.6122 12 6 4.4577 -0.3466 4.4658 13 7 3.5581 -1.2973 4.5934 14 14 4.3134 1.2177 5.4766 15 1 3.1070 1.1401 6.3392 16 1 5.5208 1.3703 6.3275 17 1 4.1978 2.3859 4.5671 18 6 6.4883 -2.7745 2.7950 19 6 6.6977 -1.7717 1.6575 20 1 -0.3633 0.0773 1.0247 21 1 -0.3632 0.8489 -0.5793 22 1 -0.3634 -0.9261 -0.4455 23 1 3.1463 1.3256 -0.5207 24 1 1.5406 2.0937 -0.5070 25 1 2.3542 1.7046 1.0276 26 1 3.1715 -0.8753 -1.2683 27 1 1.6112 -1.8583 -1.2686 28 1 0.7309 -1.6564 2.2099 29 1 0.7280 -2.6588 0.7389 30 1 1.9920 -2.8895 1.9706 31 1 4.1324 -0.3204 0.8160 32 1 4.2296 -2.7484 1.2436 33 1 3.4829 -2.3794 2.8168 34 1 2.8613 -1.2189 5.2637 35 1 7.1567 -2.7090 3.6535 36 1 6.1653 -3.7802 2.5261 37 1 6.5125 -2.1181 0.6409 38 1 7.5037 -1.0462 1.7676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702001532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:39 Heat of formation + Delta-G solvation = 45.135823 kcal Electronic energy + Delta-G solvation = -16231.488471 eV Core-core repulsion = 13882.332552 eV Total energy + Delta-G solvation = -2349.155919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85299 -36.55680 -32.47955 -31.90591 -29.12245 -27.71763 -26.35548 -25.44520 -24.00468 -21.12301 -20.06667 -18.84071 -17.51475 -16.23479 -14.94291 -14.65878 -14.50946 -13.66972 -13.59372 -13.12852 -12.91589 -12.57392 -12.08749 -11.82717 -11.68617 -11.67273 -11.45356 -11.36261 -11.12950 -10.81815 -10.67653 -10.51312 -10.39697 -10.12608 -9.60277 -9.35631 -8.91690 -8.84814 -8.59089 -7.90278 -7.03591 -5.84471 -3.87091 3.40159 3.44699 3.49307 4.20699 4.52314 4.86165 5.14916 5.18654 5.24808 5.42501 5.50532 5.68641 5.91605 5.96818 6.12187 6.16042 6.18991 6.19893 6.24718 6.29558 6.33635 6.42067 6.53930 6.58125 6.64632 6.72662 6.78087 6.82397 6.87645 6.99913 7.21193 7.38414 7.71468 8.11706 8.28170 8.44244 8.66692 9.05723 9.72819 11.17067 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022133 B = 0.011090 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.762158 B = 2524.084627 C = 3124.771682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.107 4.107 4 C -0.225 4.225 5 C 0.084 3.916 6 C -0.108 4.108 7 N -0.613 5.613 8 C 0.105 3.895 9 C 0.061 3.939 10 C -0.486 4.486 11 H 0.053 0.947 12 C 0.093 3.907 13 N -0.868 5.868 14 Si 0.890 3.110 15 H -0.290 1.290 16 H -0.283 1.283 17 H -0.276 1.276 18 C -0.205 4.205 19 C -0.221 4.221 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.328 0.672 32 H -0.018 1.018 33 H 0.120 0.880 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 0.295 -7.640 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.164 4.164 4 C -0.266 4.266 5 C -0.010 4.010 6 C -0.166 4.166 7 N -0.239 5.239 8 C -0.023 4.023 9 C 0.060 3.940 10 C -0.523 4.523 11 H 0.071 0.929 12 C -0.111 4.111 13 N -0.505 5.505 14 Si 0.719 3.281 15 H -0.216 1.216 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.244 4.244 19 C -0.258 4.258 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.000 1.000 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.400 0.458 -6.945 8.809 hybrid contribution 0.424 0.380 -0.442 0.721 sum -4.976 0.838 -7.387 8.946 Atomic orbital electron populations 1.21267 0.92753 1.00874 1.01541 1.21706 0.94157 0.91818 1.05150 1.21214 0.98982 0.93681 1.02534 1.24020 1.02183 1.02231 0.98131 1.21744 0.94640 0.96687 0.87929 1.21307 0.98479 0.97412 0.99352 1.59984 1.03348 1.25729 1.34886 1.21690 0.96347 0.88003 0.96235 1.19032 0.85775 0.94619 0.94578 1.20228 1.04606 1.10873 1.16559 0.92902 1.24713 0.94739 0.95499 0.96139 1.69759 1.15967 1.31984 1.32761 0.86719 0.76957 0.84812 0.79639 1.21568 1.20923 1.20185 1.22940 1.08118 0.94171 0.99133 1.22941 1.05161 1.04130 0.93604 0.92269 0.92931 0.93018 0.93050 0.93496 0.91216 0.89767 0.89896 0.91937 0.93552 0.90929 0.85380 1.00026 0.86200 0.93212 0.90479 0.92028 0.92005 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 8.87 37.16 0.33 -1.14 16 2 C -0.13 -2.04 2.70 -154.50 -0.42 -2.46 16 3 C -0.11 -1.69 9.04 37.16 0.34 -1.35 16 4 C -0.23 -3.58 9.18 -26.73 -0.25 -3.83 16 5 C 0.08 1.53 2.79 -131.60 -0.37 1.16 16 6 C -0.11 -1.90 8.66 37.16 0.32 -1.58 16 7 N -0.61 -13.14 5.97 -99.96 -0.60 -13.74 16 8 C 0.10 2.43 3.81 -3.82 -0.01 2.42 16 9 C 0.06 1.49 1.95 -155.66 -0.30 1.19 16 10 C -0.49 -13.16 8.73 -34.44 -0.30 -13.46 16 11 H 0.05 1.46 7.84 -52.49 -0.41 1.04 16 12 C 0.09 2.51 5.17 -17.82 -0.09 2.42 16 13 N -0.87 -23.63 10.80 55.43 0.60 -23.03 16 14 Si 0.89 21.42 29.56 -169.99 -5.02 16.40 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.20 -4.73 9.96 -26.69 -0.27 -5.00 16 19 C -0.22 -4.87 9.93 -26.69 -0.26 -5.14 16 20 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 21 H 0.05 0.64 7.88 -51.93 -0.41 0.23 16 22 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 23 H 0.05 0.79 7.74 -51.93 -0.40 0.39 16 24 H 0.05 0.64 7.86 -51.93 -0.41 0.23 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.34 8.01 -51.93 -0.42 0.92 16 27 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 28 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 29 H 0.05 0.69 7.77 -51.93 -0.40 0.29 16 30 H 0.07 1.39 5.75 -51.93 -0.30 1.09 16 31 H 0.33 6.94 7.90 -39.29 -0.31 6.63 16 32 H -0.02 -0.41 8.07 -51.93 -0.42 -0.83 16 33 H 0.12 3.05 4.50 -51.93 -0.23 2.81 16 34 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -26.86 302.56 -8.36 -35.21 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.61 Total: 7.36 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -1.28 Total: -26.76 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.00 Total: -36.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.86 -8.36 -35.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702001532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.350 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds