Wall clock time and date at job start Mon Mar 30 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 115.55842 * 2 1 4 4 C 1.52994 * 117.49951 * 214.31350 * 2 1 3 5 5 C 1.52993 * 117.49762 * 145.69042 * 2 1 3 6 6 C 1.53005 * 117.49613 * 214.97966 * 5 2 1 7 7 N 1.46899 * 117.52043 * 0.02562 * 5 2 1 8 8 C 1.46904 * 110.99802 * 149.01441 * 7 5 2 9 9 C 1.53007 * 109.47036 * 181.93462 * 8 7 5 10 10 C 1.50697 * 115.55028 * 277.97855 * 9 8 7 11 11 H 1.07993 * 120.00173 * 115.23159 * 10 9 8 12 12 C 1.37879 * 119.99964 * 295.22450 * 10 9 8 13 13 N 1.31518 * 119.99778 * 355.33837 * 12 10 9 14 14 Si 1.86796 * 119.99999 * 175.33772 * 12 10 9 15 15 H 1.48503 * 109.47091 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46990 * 120.00050 * 14 12 10 17 17 H 1.48500 * 109.47208 * 240.00249 * 14 12 10 18 18 C 1.52998 * 117.49311 * 132.26861 * 9 8 7 19 19 C 1.53002 * 117.49498 * 63.64814 * 9 8 7 20 20 H 1.08996 * 109.47386 * 278.24606 * 1 2 3 21 21 H 1.09004 * 109.47540 * 38.25200 * 1 2 3 22 22 H 1.09004 * 109.46868 * 158.24781 * 1 2 3 23 23 H 1.09001 * 109.47122 * 205.68669 * 3 2 1 24 24 H 1.09004 * 109.47273 * 325.69104 * 3 2 1 25 25 H 1.09006 * 109.46934 * 85.68606 * 3 2 1 26 26 H 1.08995 * 117.49987 * 145.02291 * 4 2 1 27 27 H 1.08997 * 117.52164 * 359.97438 * 4 2 1 28 28 H 1.08991 * 109.47118 * 299.98647 * 6 5 2 29 29 H 1.08998 * 109.47158 * 179.97438 * 6 5 2 30 30 H 1.09001 * 109.46768 * 59.99059 * 6 5 2 31 31 H 1.00900 * 110.99953 * 25.06909 * 7 5 2 32 32 H 1.08996 * 109.47137 * 301.93573 * 8 7 5 33 33 H 1.09005 * 109.47189 * 61.94140 * 8 7 5 34 34 H 0.96998 * 119.99959 * 185.01779 * 13 12 10 35 35 H 1.09002 * 117.50535 * 359.97438 * 18 9 8 36 36 H 1.09003 * 117.49833 * 145.02502 * 18 9 8 37 37 H 1.09002 * 117.49635 * 214.98052 * 19 9 8 38 38 H 1.08994 * 117.50080 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2364 -1.1210 0.7649 6 6 3.5490 -0.7759 1.4714 7 7 1.3942 -2.1155 1.4429 8 6 2.0560 -3.4264 1.4827 9 6 1.1306 -4.4448 2.1516 10 6 1.1383 -4.4385 3.6585 11 1 0.2470 -4.1620 4.2020 12 6 2.2834 -4.7861 4.3435 13 7 3.3398 -5.2110 3.6855 14 14 2.3341 -4.6534 6.2061 15 1 1.0271 -4.1528 6.7024 16 1 2.6066 -5.9912 6.7903 17 1 3.4091 -3.7102 6.6061 18 6 0.9384 -5.7914 1.4512 19 6 -0.1933 -4.7617 1.4532 20 1 -0.3634 0.1474 1.0170 21 1 -0.3634 0.8070 -0.6363 22 1 -0.3633 -0.9545 -0.3809 23 1 3.1824 1.3085 -0.4454 24 1 1.5811 2.0744 -0.5793 25 1 2.2771 1.7414 1.0248 26 1 3.1715 -0.8751 -1.2682 27 1 1.6116 -1.8588 -1.2681 28 1 4.2752 -0.4259 0.7380 29 1 3.9365 -1.6633 1.9718 30 1 3.3700 0.0074 2.2080 31 1 0.4880 -2.1812 1.0041 32 1 2.2800 -3.7513 0.4667 33 1 2.9824 -3.3486 2.0519 34 1 4.1195 -5.5242 4.1701 35 1 1.4709 -5.9517 0.5136 36 1 0.8176 -6.6733 2.0803 37 1 -1.0587 -4.9661 2.0837 38 1 -0.4052 -4.2445 0.5175 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702001536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:41 Heat of formation + Delta-G solvation = 21.340149 kcal Electronic energy + Delta-G solvation = -15966.643458 eV Core-core repulsion = 13616.455681 eV Total energy + Delta-G solvation = -2350.187777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41079 -38.38864 -34.12806 -33.84040 -30.74406 -28.86661 -27.80195 -27.59876 -25.87600 -22.97006 -21.53164 -20.70389 -19.11523 -18.09199 -16.79912 -16.45976 -16.17455 -15.42682 -15.04367 -14.74454 -14.34812 -14.21051 -13.70922 -13.63725 -13.11046 -13.08932 -12.99442 -12.91391 -12.85483 -12.65939 -12.41366 -12.32818 -12.07251 -11.92736 -11.29192 -11.15938 -10.72592 -10.47600 -10.31030 -9.93288 -8.91477 -8.05063 -6.12966 1.40709 1.44122 1.54379 2.46184 2.74119 3.18689 3.31471 3.64603 3.76222 3.90452 3.93972 4.22452 4.34919 4.56327 4.62635 4.71549 4.77870 4.81104 4.84413 4.87706 4.90526 4.93679 4.98164 5.06134 5.08355 5.13887 5.19213 5.25437 5.31620 5.37483 5.51582 5.57725 5.70917 5.96326 6.39361 6.48354 6.75612 6.89462 7.51721 9.02920 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.008426 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.801344 B = 3322.288623 C = 3750.971700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C -0.108 4.108 4 C -0.212 4.212 5 C 0.041 3.959 6 C -0.100 4.100 7 N -0.647 5.647 8 C 0.129 3.871 9 C 0.029 3.971 10 C -0.490 4.490 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.910 5.910 14 Si 0.947 3.053 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.184 4.184 19 C -0.184 4.184 20 H 0.058 0.942 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.336 0.664 32 H -0.007 1.007 33 H 0.058 0.942 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 10.473 -8.017 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.165 4.165 4 C -0.251 4.251 5 C -0.052 4.052 6 C -0.157 4.157 7 N -0.276 5.276 8 C 0.000 4.000 9 C 0.029 3.971 10 C -0.528 4.528 11 H 0.065 0.935 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.774 3.226 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.222 4.222 19 C -0.222 4.222 20 H 0.077 0.923 21 H 0.098 0.902 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.768 10.636 -7.325 13.034 hybrid contribution 0.146 -0.901 0.112 0.920 sum -1.622 9.734 -7.213 12.224 Atomic orbital electron populations 1.21319 0.91635 1.01985 1.02217 1.21942 0.95387 0.91860 1.01905 1.21314 1.00217 0.92741 1.02218 1.23920 1.02928 1.02081 0.96198 1.21961 0.96324 0.97254 0.89617 1.21156 0.93762 1.00780 1.00038 1.60098 1.04763 1.06911 1.55838 1.21105 0.97478 0.87112 0.94294 1.18974 0.93013 0.92247 0.92898 1.20688 0.96702 1.45072 0.90363 0.93489 1.25575 0.95151 0.94938 1.01802 1.70068 1.05138 1.43357 1.36258 0.85674 0.77954 0.77481 0.81517 1.19508 1.20755 1.20907 1.22704 1.03631 0.94992 1.00913 1.22824 0.93033 1.04670 1.01630 0.92326 0.90226 0.93287 0.91919 0.90618 0.92179 0.88085 0.90147 0.90641 0.94511 0.91808 0.84422 0.98889 0.92371 0.93286 0.91193 0.91896 0.90328 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 8.77 71.98 0.63 -2.10 16 2 C -0.11 -2.86 2.70 -52.18 -0.14 -3.00 16 3 C -0.11 -2.21 8.88 71.98 0.64 -1.57 16 4 C -0.21 -5.98 9.35 30.59 0.29 -5.69 16 5 C 0.04 1.36 2.37 3.53 0.01 1.37 16 6 C -0.10 -3.28 8.97 71.98 0.65 -2.64 16 7 N -0.65 -26.01 6.56 -470.17 -3.08 -29.10 16 8 C 0.13 6.05 5.32 86.30 0.46 6.51 16 9 C 0.03 1.47 1.52 -52.93 -0.08 1.39 16 10 C -0.49 -27.42 8.84 25.60 0.23 -27.19 16 11 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 12 C 0.02 1.38 5.28 84.65 0.45 1.83 16 13 N -0.91 -52.58 12.35 21.45 0.26 -52.31 16 14 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 C -0.18 -8.70 9.88 30.59 0.30 -8.39 16 19 C -0.18 -7.86 9.45 30.60 0.29 -7.57 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.08 1.50 7.99 -2.38 -0.02 1.48 16 22 H 0.05 1.21 7.18 -2.38 -0.02 1.19 16 23 H 0.06 1.19 7.78 -2.39 -0.02 1.17 16 24 H 0.07 1.26 7.97 -2.38 -0.02 1.25 16 25 H 0.06 1.26 8.02 -2.38 -0.02 1.24 16 26 H 0.10 2.57 7.96 -2.39 -0.02 2.55 16 27 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.07 2.04 7.77 -2.39 -0.02 2.02 16 29 H 0.04 1.45 6.51 -2.39 -0.02 1.43 16 30 H 0.06 1.98 8.02 -2.39 -0.02 1.96 16 31 H 0.34 12.63 6.12 -89.69 -0.55 12.08 16 32 H -0.01 -0.32 7.93 -2.39 -0.02 -0.34 16 33 H 0.06 3.14 5.61 -2.38 -0.01 3.13 16 34 H 0.26 14.27 8.32 -92.71 -0.77 13.49 16 35 H 0.07 3.12 8.07 -2.39 -0.02 3.10 16 36 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.09 3.20 7.90 -2.39 -0.02 3.18 16 Total: -1.00 -59.94 304.54 3.39 -56.55 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.47 Total: 25.28 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 3.71 Total: -47.07 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.82 Total: -81.41 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -59.94 3.39 -56.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702001536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.892 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds