Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47066 * 269.99876 * 3 2 1 5 5 H 1.48498 * 109.47187 * 29.99694 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99723 * 3 2 1 7 7 C 1.37873 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46988 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99925 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46514 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.05564 * 306.48059 * 13 12 11 15 15 C 1.54383 * 110.11914 * 68.00381 * 13 12 11 16 16 C 1.55287 * 104.26009 * 142.81155 * 15 13 12 17 17 C 1.54991 * 102.65467 * 322.30703 * 16 15 13 18 18 C 1.53484 * 110.06420 * 185.00290 * 13 12 11 19 19 C 1.52545 * 121.08989 * 24.77269 * 18 13 12 20 20 C 1.52566 * 121.05873 * 96.49491 * 18 13 12 21 21 H 0.97006 * 120.00137 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47183 * 59.99917 * 9 7 2 23 23 H 1.09001 * 109.47157 * 299.99484 * 9 7 2 24 24 H 1.08994 * 109.47088 * 60.00028 * 10 9 7 25 25 H 1.09001 * 109.46888 * 299.99817 * 10 9 7 26 26 H 1.00903 * 110.99833 * 56.04323 * 11 10 9 27 27 H 1.08995 * 109.47015 * 60.00111 * 12 11 10 28 28 H 1.09000 * 109.46905 * 299.99861 * 12 11 10 29 29 H 1.08991 * 110.48086 * 261.49576 * 15 13 12 30 30 H 1.08997 * 110.48121 * 23.99911 * 15 13 12 31 31 H 1.08999 * 110.89007 * 203.99477 * 16 15 13 32 32 H 1.08998 * 110.75233 * 80.55529 * 16 15 13 33 33 H 1.09002 * 110.51194 * 278.84128 * 17 16 15 34 34 H 1.08994 * 110.51242 * 156.26806 * 17 16 15 35 35 H 1.09001 * 117.51437 * 217.89382 * 19 18 13 36 36 H 1.09002 * 117.51189 * 2.97442 * 19 18 13 37 37 H 1.09001 * 117.50684 * 356.96745 * 20 18 13 38 38 H 1.08993 * 117.51561 * 142.02437 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4354 -6.0759 0.0006 13 6 1.6352 -7.3800 0.0006 14 1 0.9212 -7.3804 0.8241 15 6 0.8942 -7.5483 -1.3433 16 6 0.9724 -9.0716 -1.6350 17 6 2.3925 -9.4404 -1.1355 18 6 2.5840 -8.5799 0.1257 19 6 3.9586 -8.4333 0.7705 20 6 2.8588 -9.2283 1.4791 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.8741 -4.9845 -0.7800 27 1 3.0639 -6.0348 0.8901 28 1 3.0627 -6.0349 -0.8899 29 1 -0.1443 -7.2314 -1.2485 30 1 1.3948 -6.9818 -2.1284 31 1 0.8754 -9.2683 -2.7027 32 1 0.2123 -9.6123 -1.0712 33 1 3.1397 -9.1872 -1.8877 34 1 2.4465 -10.5002 -0.8866 35 1 4.7831 -8.9954 0.3318 36 1 4.2203 -7.4586 1.1823 37 1 2.3969 -8.7763 2.3569 38 1 2.9592 -10.3132 1.5066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -3.824768 kcal Electronic energy + Delta-G solvation = -15131.716993 eV Core-core repulsion = 12780.437983 eV Total energy + Delta-G solvation = -2351.279010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57199 -35.78895 -34.08981 -32.90808 -30.55337 -28.02732 -25.98698 -24.21046 -22.93968 -22.14289 -20.62638 -20.34288 -18.26746 -16.32673 -15.84280 -15.32750 -15.26925 -14.47660 -14.41864 -13.61079 -13.26925 -13.02485 -12.61651 -12.42840 -12.07029 -11.91681 -11.48026 -11.12120 -11.03312 -10.91993 -10.80045 -10.59120 -10.49874 -10.39099 -10.24235 -9.95840 -9.64119 -9.28942 -9.10866 -8.33067 -7.75474 -5.97558 -4.00050 3.33445 3.39499 3.43100 3.71067 4.34209 4.46509 4.58343 4.72700 4.82409 5.06549 5.14057 5.18974 5.38311 5.41787 5.48492 5.59068 5.65474 5.74017 5.78914 5.81390 5.95040 5.97118 6.04891 6.07059 6.14143 6.21354 6.33568 6.39404 6.42932 6.54049 7.01793 7.53672 7.76562 7.86821 8.01542 8.12135 8.46595 9.07267 9.63606 11.13940 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051469 B = 0.004566 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.881434 B = 6130.204014 C = 6423.011793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.067 3.933 13 C -0.055 4.055 14 H 0.081 0.919 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.174 4.174 20 C -0.170 4.170 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.335 0.665 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -18.898 -1.472 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.063 4.063 13 C -0.073 4.073 14 H 0.100 0.900 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.211 4.211 20 C -0.207 4.207 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.046 -18.771 -0.781 19.218 hybrid contribution 0.850 1.006 -0.879 1.584 sum 4.897 -17.765 -1.661 18.502 Atomic orbital electron populations 1.69975 1.06037 1.26557 1.50727 1.24999 0.94836 0.99196 0.95319 0.86589 0.79848 0.83474 0.78049 1.20712 1.21183 1.19888 1.21187 0.92979 0.91059 1.50789 0.92793 1.19071 0.94037 0.90463 0.97677 1.22147 0.96958 0.88638 0.98502 1.60615 1.19874 1.02139 1.49687 1.22012 0.94392 0.90004 0.99886 1.21255 0.95856 0.91961 0.98266 0.90033 1.22494 1.00706 0.95789 0.96765 1.22511 0.96564 0.96407 1.00401 1.21871 0.97306 0.98095 0.95265 1.21759 0.98033 0.98610 0.93906 1.22979 0.91860 1.02085 1.04153 1.22971 1.03284 0.98916 0.95550 0.93008 0.96858 0.95657 0.92499 0.96807 0.84788 0.91564 0.95906 0.91165 0.91708 0.91715 0.91514 0.91447 0.92020 0.89139 0.88358 0.88742 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.67 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 11 N -0.69 -12.83 6.50 -113.78 -0.74 -13.57 16 12 C 0.07 1.01 4.53 -3.82 -0.02 1.00 16 13 C -0.05 -0.70 3.02 -89.64 -0.27 -0.97 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.12 -1.41 5.59 -24.79 -0.14 -1.55 16 16 C -0.12 -1.19 6.94 -24.47 -0.17 -1.36 16 17 C -0.09 -0.87 6.57 -25.22 -0.17 -1.03 16 18 C -0.12 -1.36 2.26 -154.25 -0.35 -1.71 16 19 C -0.17 -1.85 9.61 -26.92 -0.26 -2.11 16 20 C -0.17 -1.73 10.24 -26.91 -0.28 -2.01 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.33 6.00 7.98 -39.29 -0.31 5.68 16 27 H 0.07 1.02 6.44 -51.93 -0.33 0.69 16 28 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.12 6.40 -51.93 -0.33 0.78 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -30.01 303.28 -9.51 -39.52 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.83 Total: 0.76 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.22 Total: -21.62 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.00 Total: -40.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.01 -9.51 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.695 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds