Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47066 * 269.99876 * 3 2 1 5 5 H 1.48498 * 109.47187 * 29.99694 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99723 * 3 2 1 7 7 C 1.37873 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46988 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99925 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46514 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.05564 * 306.48059 * 13 12 11 15 15 C 1.54383 * 110.11914 * 68.00381 * 13 12 11 16 16 C 1.55287 * 104.26009 * 142.81155 * 15 13 12 17 17 C 1.54991 * 102.65467 * 322.30703 * 16 15 13 18 18 C 1.53484 * 110.06420 * 185.00290 * 13 12 11 19 19 C 1.52545 * 121.08989 * 24.77269 * 18 13 12 20 20 C 1.52566 * 121.05873 * 96.49491 * 18 13 12 21 21 H 0.97006 * 120.00137 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47183 * 59.99917 * 9 7 2 23 23 H 1.09001 * 109.47157 * 299.99484 * 9 7 2 24 24 H 1.08994 * 109.47088 * 60.00028 * 10 9 7 25 25 H 1.09001 * 109.46888 * 299.99817 * 10 9 7 26 26 H 1.00903 * 110.99833 * 56.04323 * 11 10 9 27 27 H 1.08995 * 109.47015 * 60.00111 * 12 11 10 28 28 H 1.09000 * 109.46905 * 299.99861 * 12 11 10 29 29 H 1.08991 * 110.48086 * 261.49576 * 15 13 12 30 30 H 1.08997 * 110.48121 * 23.99911 * 15 13 12 31 31 H 1.08999 * 110.89007 * 203.99477 * 16 15 13 32 32 H 1.08998 * 110.75233 * 80.55529 * 16 15 13 33 33 H 1.09002 * 110.51194 * 278.84128 * 17 16 15 34 34 H 1.08994 * 110.51242 * 156.26806 * 17 16 15 35 35 H 1.09001 * 117.51437 * 217.89382 * 19 18 13 36 36 H 1.09002 * 117.51189 * 2.97442 * 19 18 13 37 37 H 1.09001 * 117.50684 * 356.96745 * 20 18 13 38 38 H 1.08993 * 117.51561 * 142.02437 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4354 -6.0759 0.0006 13 6 1.6352 -7.3800 0.0006 14 1 0.9212 -7.3804 0.8241 15 6 0.8942 -7.5483 -1.3433 16 6 0.9724 -9.0716 -1.6350 17 6 2.3925 -9.4404 -1.1355 18 6 2.5840 -8.5799 0.1257 19 6 3.9586 -8.4333 0.7705 20 6 2.8588 -9.2283 1.4791 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.8741 -4.9845 -0.7800 27 1 3.0639 -6.0348 0.8901 28 1 3.0627 -6.0349 -0.8899 29 1 -0.1443 -7.2314 -1.2485 30 1 1.3948 -6.9818 -2.1284 31 1 0.8754 -9.2683 -2.7027 32 1 0.2123 -9.6123 -1.0712 33 1 3.1397 -9.1872 -1.8877 34 1 2.4465 -10.5002 -0.8866 35 1 4.7831 -8.9954 0.3318 36 1 4.2203 -7.4586 1.1823 37 1 2.3969 -8.7763 2.3569 38 1 2.9592 -10.3132 1.5066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706219045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -21.187772 kcal Electronic energy + Delta-G solvation = -15132.469909 eV Core-core repulsion = 12780.437983 eV Total energy + Delta-G solvation = -2352.031926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50452 -37.34537 -35.26224 -34.71445 -32.18977 -29.57590 -27.02242 -25.98349 -24.10050 -23.08635 -22.50668 -21.33880 -19.22226 -18.51858 -17.12092 -16.57068 -16.44289 -16.11696 -15.51384 -15.09395 -14.72006 -14.34619 -14.12419 -13.66405 -13.37890 -13.16193 -13.04775 -12.81204 -12.48009 -12.28454 -11.98626 -11.88974 -11.74133 -11.53359 -11.45939 -11.39457 -11.16725 -11.05555 -10.57645 -10.45460 -9.30878 -8.21312 -6.33304 1.39848 1.41748 1.52996 2.39978 2.85353 3.12000 3.30428 3.60048 3.72670 3.96742 4.03731 4.22702 4.30080 4.40358 4.46551 4.55355 4.58499 4.60752 4.80772 4.84798 4.92066 4.97098 4.99106 5.03672 5.10533 5.17904 5.21515 5.29900 5.35239 5.40130 5.42788 5.50201 5.64948 5.77063 6.12562 6.26674 6.53097 6.83575 7.36141 8.90999 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051469 B = 0.004566 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.881434 B = 6130.204014 C = 6423.011793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.698 5.698 12 C 0.071 3.929 13 C -0.051 4.051 14 H 0.068 0.932 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.084 4.084 18 C -0.131 4.131 19 C -0.177 4.177 20 C -0.163 4.163 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.006 1.006 24 H 0.055 0.945 25 H 0.017 0.983 26 H 0.338 0.662 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -19.759 -1.807 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.329 5.329 12 C -0.058 4.058 13 C -0.070 4.070 14 H 0.086 0.914 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.122 4.122 18 C -0.132 4.132 19 C -0.213 4.213 20 C -0.200 4.200 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.012 0.988 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.155 0.845 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.295 -19.656 -1.118 20.387 hybrid contribution 0.423 1.249 -0.755 1.520 sum 5.719 -18.407 -1.873 19.365 Atomic orbital electron populations 1.70109 1.07865 1.27868 1.51327 1.25986 0.95779 1.03416 0.94500 0.85398 0.78604 0.78169 0.78564 1.19619 1.20595 1.18754 1.21607 0.93515 0.92262 1.51125 0.92207 1.18923 0.94287 0.92317 0.95042 1.21777 0.95625 0.88610 0.98534 1.60538 1.20423 1.01859 1.50042 1.22051 0.94125 0.89820 0.99782 1.21183 0.95859 0.91472 0.98496 0.91361 1.22492 1.00090 0.97555 0.95862 1.22500 0.96915 0.94540 1.01361 1.21875 0.97117 0.98716 0.94455 1.21775 0.97953 0.98234 0.95224 1.23015 0.92176 1.01917 1.04223 1.23033 1.02429 0.99892 0.94673 0.92678 0.99027 0.98756 0.92616 0.96481 0.84453 0.91812 0.95684 0.91683 0.92355 0.90448 0.90959 0.91288 0.90405 0.87697 0.89550 0.89388 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.76 5.23 29.85 0.16 1.91 16 10 C 0.08 3.70 5.62 86.31 0.49 4.18 16 11 N -0.70 -26.18 6.50 -513.88 -3.34 -29.52 16 12 C 0.07 2.15 4.53 86.30 0.39 2.54 16 13 C -0.05 -1.29 3.02 -10.16 -0.03 -1.32 16 14 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.12 -2.77 5.59 31.85 0.18 -2.60 16 16 C -0.12 -2.03 6.94 32.06 0.22 -1.81 16 17 C -0.08 -1.44 6.57 31.57 0.21 -1.24 16 18 C -0.13 -2.69 2.26 -52.02 -0.12 -2.81 16 19 C -0.18 -3.45 9.61 30.47 0.29 -3.16 16 20 C -0.16 -3.01 10.24 30.48 0.31 -2.69 16 21 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.34 12.33 7.98 -89.69 -0.72 11.62 16 27 H 0.06 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.39 7.76 -2.39 -0.02 1.37 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.10 8.11 -2.39 -0.02 1.08 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.89 6.40 -2.39 -0.02 1.88 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.06 303.28 2.05 -62.00 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.29 Total: 16.40 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 2.79 Total: -38.24 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -3.06 Total: -87.03 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.06 2.05 -62.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.814 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds