Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08995 * 110.05161 * 54.29724 * 13 12 11 15 15 C 1.54383 * 110.07241 * 292.81184 * 13 12 11 16 16 C 1.55013 * 104.18440 * 217.23879 * 15 13 12 17 17 C 1.54988 * 102.84595 * 37.66296 * 16 15 13 18 18 C 1.53479 * 110.06667 * 175.78709 * 13 12 11 19 19 C 1.52554 * 121.08491 * 335.17779 * 18 13 12 20 20 C 1.52566 * 121.05443 * 263.46229 * 18 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 27 27 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 28 28 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 29 29 H 1.09008 * 110.47997 * 335.88922 * 15 13 12 30 30 H 1.08997 * 110.48329 * 98.51131 * 15 13 12 31 31 H 1.08998 * 110.69671 * 279.33376 * 16 15 13 32 32 H 1.08991 * 110.75193 * 156.02061 * 16 15 13 33 33 H 1.09004 * 110.50979 * 203.81148 * 17 16 15 34 34 H 1.09002 * 110.50937 * 81.11507 * 17 16 15 35 35 H 1.08995 * 117.51056 * 357.03465 * 19 18 13 36 36 H 1.09008 * 117.50490 * 142.11422 * 19 18 13 37 37 H 1.09004 * 117.51504 * 217.93356 * 20 18 13 38 38 H 1.09007 * 117.51194 * 2.99268 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 1 0.9309 -7.3863 -0.8312 15 6 0.8785 -7.5374 1.3369 16 6 0.9549 -9.0556 1.6402 17 6 2.3800 -9.4315 1.1607 18 6 2.5854 -8.5807 -0.1048 19 6 3.9672 -8.4388 -0.7355 20 6 2.8753 -9.2393 -1.4501 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.8747 -4.9841 -0.7817 27 1 3.0639 -6.0348 -0.8890 28 1 3.0627 -6.0349 0.8910 29 1 1.3712 -6.9661 2.1238 30 1 -0.1588 -7.2211 1.2273 31 1 0.2004 -9.6003 1.0726 32 1 0.8452 -9.2420 2.7084 33 1 2.4344 -10.4933 0.9202 34 1 3.1188 -9.1725 1.9192 35 1 4.2333 -7.4672 -1.1517 36 1 4.7868 -8.9975 -0.2834 37 1 2.9767 -10.3245 -1.4681 38 1 2.4227 -8.7946 -2.3364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -7.443954 kcal Electronic energy + Delta-G solvation = -15159.702669 eV Core-core repulsion = 12808.266720 eV Total energy + Delta-G solvation = -2351.435949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59592 -35.89955 -34.15081 -33.18342 -30.47994 -27.86351 -25.89281 -23.94051 -22.93890 -22.09640 -20.90961 -20.53791 -18.37417 -16.69415 -15.77322 -15.51314 -14.92757 -14.75737 -13.80972 -13.75962 -13.61694 -13.13618 -12.61157 -12.52941 -12.15656 -11.64371 -11.45890 -11.35859 -11.01236 -10.93421 -10.74308 -10.65430 -10.52344 -10.28042 -10.11272 -10.05446 -9.78385 -9.55291 -8.54802 -8.29563 -7.84203 -6.33267 -4.01877 3.45586 3.47956 3.65360 3.66675 4.32679 4.51769 4.58489 4.67891 4.78075 5.03782 5.16885 5.21594 5.27520 5.44753 5.48297 5.57119 5.62402 5.71161 5.74385 5.83910 5.92762 5.95088 6.00494 6.09731 6.11176 6.19753 6.26890 6.35132 6.37897 6.50884 6.85851 7.29954 7.53443 7.72515 7.90520 8.27948 8.49522 8.91995 9.70644 11.07933 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.004587 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.219182 B = 6103.114004 C = 6392.263355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.074 3.926 11 N -0.692 5.692 12 C 0.067 3.933 13 C -0.054 4.054 14 H 0.069 0.931 15 C -0.103 4.103 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.174 4.174 20 C -0.172 4.172 21 H 0.269 0.731 22 H 0.016 0.984 23 H 0.004 0.996 24 H 0.015 0.985 25 H 0.059 0.941 26 H 0.333 0.667 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 -19.120 0.040 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.055 4.055 11 N -0.322 5.322 12 C -0.062 4.062 13 C -0.072 4.072 14 H 0.087 0.913 15 C -0.141 4.141 16 C -0.163 4.163 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.211 4.211 20 C -0.209 4.209 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.022 0.978 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.150 0.850 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.472 -17.465 0.733 18.043 hybrid contribution 0.662 -1.674 -1.033 2.075 sum 5.134 -19.139 -0.300 19.818 Atomic orbital electron populations 1.70770 1.06866 1.30679 1.46574 1.25840 0.96561 1.02667 0.93798 0.83540 0.74870 0.75346 0.76463 1.20741 1.21436 1.21532 1.22004 0.94213 0.92063 1.55916 0.93471 1.19196 0.94678 0.92262 0.96364 1.21986 0.96613 0.88148 0.98722 1.60570 1.19992 1.02162 1.49485 1.22031 0.94350 0.89912 0.99953 1.21226 0.95475 0.91927 0.98620 0.91258 1.22278 1.00540 0.94748 0.96531 1.22527 0.96301 0.97036 1.00452 1.21867 0.97430 0.98002 0.95148 1.21779 0.97796 0.98614 0.94085 1.22981 0.91966 1.01999 1.04134 1.22968 1.03465 0.98944 0.95484 0.92019 0.96537 0.97806 0.96696 0.92287 0.85001 0.96018 0.91354 0.91086 0.91399 0.91774 0.91713 0.92064 0.91322 0.88498 0.89009 0.89059 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.65 55.43 0.76 -27.85 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 9 C 0.01 0.33 4.54 -27.88 -0.13 0.20 16 10 C 0.07 1.61 5.62 -3.83 -0.02 1.59 16 11 N -0.69 -12.60 6.31 -113.78 -0.72 -13.32 16 12 C 0.07 1.01 4.44 -3.82 -0.02 0.99 16 13 C -0.05 -0.68 2.95 -89.64 -0.26 -0.95 16 14 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.10 -1.29 6.20 -24.94 -0.15 -1.44 16 16 C -0.13 -1.28 6.91 -24.62 -0.17 -1.45 16 17 C -0.09 -0.87 6.58 -25.23 -0.17 -1.03 16 18 C -0.12 -1.35 2.26 -154.26 -0.35 -1.70 16 19 C -0.17 -1.83 9.61 -26.91 -0.26 -2.09 16 20 C -0.17 -1.71 10.23 -26.91 -0.28 -1.99 16 21 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 22 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 23 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.33 5.88 8.73 -39.29 -0.34 5.53 16 27 H 0.02 0.33 6.49 -51.93 -0.34 -0.01 16 28 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 29 H 0.07 0.97 7.77 -51.92 -0.40 0.57 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.10 6.42 -51.93 -0.33 0.76 16 36 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -30.62 303.07 -9.50 -40.13 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.81 Total: 1.33 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.21 Total: -25.53 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.04 Total: -41.17 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.62 -9.50 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.682 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds