Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08995 * 110.05161 * 54.29724 * 13 12 11 15 15 C 1.54383 * 110.07241 * 292.81184 * 13 12 11 16 16 C 1.55013 * 104.18440 * 217.23879 * 15 13 12 17 17 C 1.54988 * 102.84595 * 37.66296 * 16 15 13 18 18 C 1.53479 * 110.06667 * 175.78709 * 13 12 11 19 19 C 1.52554 * 121.08491 * 335.17779 * 18 13 12 20 20 C 1.52566 * 121.05443 * 263.46229 * 18 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 27 27 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 28 28 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 29 29 H 1.09008 * 110.47997 * 335.88922 * 15 13 12 30 30 H 1.08997 * 110.48329 * 98.51131 * 15 13 12 31 31 H 1.08998 * 110.69671 * 279.33376 * 16 15 13 32 32 H 1.08991 * 110.75193 * 156.02061 * 16 15 13 33 33 H 1.09004 * 110.50979 * 203.81148 * 17 16 15 34 34 H 1.09002 * 110.50937 * 81.11507 * 17 16 15 35 35 H 1.08995 * 117.51056 * 357.03465 * 19 18 13 36 36 H 1.09008 * 117.50490 * 142.11422 * 19 18 13 37 37 H 1.09004 * 117.51504 * 217.93356 * 20 18 13 38 38 H 1.09007 * 117.51194 * 2.99268 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 1 0.9309 -7.3863 -0.8312 15 6 0.8785 -7.5374 1.3369 16 6 0.9549 -9.0556 1.6402 17 6 2.3800 -9.4315 1.1607 18 6 2.5854 -8.5807 -0.1048 19 6 3.9672 -8.4388 -0.7355 20 6 2.8753 -9.2393 -1.4501 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.8747 -4.9841 -0.7817 27 1 3.0639 -6.0348 -0.8890 28 1 3.0627 -6.0349 0.8910 29 1 1.3712 -6.9661 2.1238 30 1 -0.1588 -7.2211 1.2273 31 1 0.2004 -9.6003 1.0726 32 1 0.8452 -9.2420 2.7084 33 1 2.4344 -10.4933 0.9202 34 1 3.1188 -9.1725 1.9192 35 1 4.2333 -7.4672 -1.1517 36 1 4.7868 -8.9975 -0.2834 37 1 2.9767 -10.3245 -1.4681 38 1 2.4227 -8.7946 -2.3364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706219046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -25.295068 kcal Electronic energy + Delta-G solvation = -15160.476751 eV Core-core repulsion = 12808.266720 eV Total energy + Delta-G solvation = -2352.210032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53024 -37.50538 -35.47183 -34.84072 -32.07430 -29.42388 -26.93264 -25.78372 -24.13532 -23.14353 -22.79391 -21.47852 -19.34852 -18.90026 -16.86223 -16.76034 -16.06258 -15.87154 -15.64407 -15.34302 -14.99681 -14.63008 -14.09239 -13.58016 -13.52776 -13.37271 -12.78848 -12.65615 -12.35397 -12.27470 -11.99794 -11.90113 -11.83505 -11.65809 -11.48487 -11.43687 -11.10575 -10.75728 -10.56352 -10.48836 -9.37614 -8.71812 -6.42341 1.52080 1.61044 1.80648 2.55616 2.80771 3.14177 3.22122 3.54085 3.73054 3.88894 4.02590 4.18129 4.26152 4.32802 4.37777 4.45023 4.48568 4.61540 4.77388 4.80617 4.84675 4.88235 4.92122 4.99025 5.09007 5.14114 5.20195 5.25551 5.25768 5.33518 5.37888 5.40167 5.51347 5.88361 6.11341 6.16241 6.39390 6.56760 7.40540 8.69450 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.004587 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.219182 B = 6103.114004 C = 6392.263355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.016 3.984 10 C 0.091 3.909 11 N -0.694 5.694 12 C 0.072 3.928 13 C -0.050 4.050 14 H 0.066 0.934 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.132 4.132 19 C -0.177 4.177 20 C -0.162 4.162 21 H 0.255 0.745 22 H -0.008 1.008 23 H -0.012 1.012 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.337 0.663 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -20.226 -0.090 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.021 4.021 10 C -0.038 4.038 11 N -0.324 5.324 12 C -0.057 4.057 13 C -0.069 4.069 14 H 0.085 0.915 15 C -0.144 4.144 16 C -0.157 4.157 17 C -0.121 4.121 18 C -0.132 4.132 19 C -0.214 4.214 20 C -0.199 4.199 21 H 0.064 0.936 22 H 0.010 0.990 23 H 0.006 0.994 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.760 -18.614 0.601 19.494 hybrid contribution 0.235 -1.374 -0.999 1.715 sum 5.995 -19.988 -0.398 20.872 Atomic orbital electron populations 1.70912 1.07969 1.29867 1.48528 1.27509 0.96591 1.06927 0.92505 0.82906 0.74102 0.70837 0.78075 1.20718 1.19334 1.19315 1.22439 0.94696 0.93396 1.55600 0.93109 1.19092 0.94975 0.93711 0.94327 1.21620 0.95294 0.88338 0.98531 1.60483 1.20432 1.01697 1.49836 1.22062 0.94092 0.89745 0.99797 1.21169 0.95624 0.91419 0.98666 0.91536 1.22256 0.99644 0.96592 0.95907 1.22501 0.96916 0.94953 1.01296 1.21869 0.96994 0.98768 0.94457 1.21775 0.97793 0.98230 0.95420 1.23015 0.92235 1.01881 1.04264 1.23044 1.02372 0.99895 0.94584 0.93564 0.98997 0.99358 0.96622 0.92639 0.84596 0.95628 0.91873 0.92694 0.92358 0.90990 0.90727 0.90321 0.91325 0.89655 0.87690 0.87256 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.65 21.45 0.29 -59.30 16 2 C -0.04 -2.26 5.46 84.65 0.46 -1.79 16 3 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.62 -36.87 9.11 25.60 0.23 -36.63 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.02 0.90 4.54 29.85 0.14 1.03 16 10 C 0.09 4.03 5.62 86.30 0.49 4.52 16 11 N -0.69 -25.47 6.31 -513.90 -3.24 -28.71 16 12 C 0.07 2.13 4.44 86.30 0.38 2.52 16 13 C -0.05 -1.23 2.95 -10.16 -0.03 -1.26 16 14 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -2.59 6.20 31.75 0.20 -2.39 16 16 C -0.12 -2.20 6.91 31.96 0.22 -1.98 16 17 C -0.08 -1.46 6.58 31.57 0.21 -1.25 16 18 C -0.13 -2.64 2.26 -52.02 -0.12 -2.76 16 19 C -0.18 -3.38 9.61 30.48 0.29 -3.09 16 20 C -0.16 -2.84 10.23 30.48 0.31 -2.52 16 21 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 22 H -0.01 -0.49 8.01 -2.39 -0.02 -0.51 16 23 H -0.01 -0.68 8.01 -2.38 -0.02 -0.70 16 24 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 25 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.34 12.00 8.73 -89.70 -0.78 11.22 16 27 H 0.03 0.75 6.49 -2.39 -0.02 0.74 16 28 H 0.06 1.95 8.02 -2.39 -0.02 1.93 16 29 H 0.05 1.50 7.77 -2.38 -0.02 1.48 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.12 8.11 -2.38 -0.02 1.10 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.83 6.42 -2.39 -0.02 1.81 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -65.47 303.07 2.21 -63.26 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.33 Total: 17.25 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 2.78 Total: -45.62 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.95 Total: -88.01 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -65.47 2.21 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.967 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds