Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.51456 * 111.15482 * 2 1 4 4 C 1.54261 * 105.75668 * 304.16351 * 3 2 1 5 5 C 1.52371 * 112.13138 * 303.25520 * 4 3 2 6 6 C 1.53953 * 112.56099 * 53.52031 * 5 4 3 7 7 C 1.51820 * 106.23503 * 303.19455 * 6 5 4 8 8 H 1.08999 * 112.98608 * 299.33522 * 7 6 5 9 9 C 1.50437 * 124.10097 * 153.47968 * 7 6 5 10 10 N 1.43575 * 112.05640 * 147.24810 * 2 1 3 11 11 C 1.46904 * 110.99812 * 323.58468 * 10 2 1 12 12 C 1.52995 * 109.47459 * 169.99968 * 11 10 2 13 13 C 1.50693 * 109.47694 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99414 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00753 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00530 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99487 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46818 * 90.00376 * 17 15 13 19 19 H 1.48499 * 109.47250 * 330.00641 * 17 15 13 20 20 H 1.48498 * 109.47184 * 209.99992 * 17 15 13 21 21 H 1.09005 * 109.46703 * 265.99815 * 1 2 3 22 22 H 1.08997 * 109.47512 * 25.99774 * 1 2 3 23 23 H 1.09006 * 109.47196 * 146.00385 * 1 2 3 24 24 H 1.09003 * 110.18652 * 63.22025 * 3 2 1 25 25 H 1.08995 * 110.18356 * 185.10410 * 3 2 1 26 26 H 1.08998 * 108.94987 * 182.57557 * 4 3 2 27 27 H 1.09001 * 108.94838 * 63.93629 * 4 3 2 28 28 H 1.09002 * 108.86708 * 292.72418 * 5 4 3 29 29 H 1.09000 * 108.78051 * 174.25729 * 5 4 3 30 30 H 1.08990 * 110.09696 * 184.01386 * 6 5 4 31 31 H 1.09003 * 110.09296 * 62.36704 * 6 5 4 32 32 H 1.09004 * 113.93990 * 107.59476 * 9 7 6 33 33 H 1.08999 * 113.94309 * 335.63808 * 9 7 6 34 34 H 1.08998 * 109.47094 * 49.99490 * 11 10 2 35 35 H 1.09003 * 109.46956 * 290.00212 * 11 10 2 36 36 H 1.09007 * 109.47309 * 59.99833 * 12 11 10 37 37 H 1.09003 * 109.47236 * 300.00073 * 12 11 10 38 38 H 0.96996 * 119.99923 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0766 1.4125 0.0000 4 6 1.4502 2.1040 -1.2285 5 6 1.7490 1.3568 -2.5223 6 6 1.3511 -0.1287 -2.4519 7 6 2.0981 -0.7125 -1.2661 8 1 3.1810 -0.6416 -1.3684 9 6 1.6269 -1.9022 -0.4751 10 7 2.0691 -1.1191 0.7199 11 6 1.2439 -1.4376 1.8928 12 6 1.6972 -2.7719 2.4883 13 6 0.8511 -3.0983 3.6918 14 1 0.0680 -2.4217 4.0008 15 6 1.0766 -4.2605 4.3986 16 7 0.3379 -4.5455 5.4486 17 14 2.4307 -5.4310 3.8636 18 1 3.6989 -5.0648 4.5441 19 1 2.6133 -5.3377 2.3929 20 1 2.0565 -6.8208 4.2289 21 1 -0.3633 -0.0717 1.0252 22 1 -0.3634 0.9236 -0.4504 23 1 -0.3634 -0.8521 -0.5746 24 1 1.7824 1.9296 0.9133 25 1 3.1626 1.3955 -0.0910 26 1 1.8464 3.1166 -1.3049 27 1 0.3701 2.1576 -1.0920 28 1 2.8167 1.4262 -2.7309 29 1 1.1999 1.8306 -3.3360 30 1 1.6461 -0.6393 -3.3685 31 1 0.2758 -0.2215 -2.2995 32 1 2.2077 -2.8079 -0.6500 33 1 0.5504 -2.0668 -0.5225 34 1 0.1985 -1.5100 1.5927 35 1 1.3539 -0.6506 2.6389 36 1 2.7426 -2.6995 2.7885 37 1 1.5872 -3.5589 1.7422 38 1 0.4964 -5.3633 5.9455 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707187708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 57.214856 kcal Electronic energy + Delta-G solvation = -16114.946747 eV Core-core repulsion = 13766.314614 eV Total energy + Delta-G solvation = -2348.632133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97626 -35.96702 -33.26811 -31.56114 -30.81572 -28.37287 -27.42502 -25.41454 -23.77536 -21.22414 -20.64146 -19.77815 -17.85021 -16.75728 -15.89064 -15.48441 -14.82578 -14.35349 -14.14388 -13.74763 -13.42712 -12.94154 -12.67677 -12.44003 -12.04044 -11.76110 -11.69036 -11.51085 -11.23954 -11.12056 -10.86630 -10.62922 -10.36423 -10.34402 -9.90825 -9.69614 -9.55058 -9.27673 -8.95377 -8.51393 -8.33943 -6.02139 -3.99996 3.34705 3.41204 3.47155 4.01354 4.48800 4.56835 4.73894 4.92611 5.06680 5.21829 5.26736 5.32614 5.34230 5.45184 5.51412 5.55417 5.73344 5.83128 5.87364 5.92102 5.95190 6.06491 6.13272 6.14396 6.18657 6.23372 6.30861 6.33205 6.41483 6.65299 6.75169 6.96042 7.24759 7.47088 7.67473 7.86432 8.55834 9.01850 9.60875 11.11301 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053724 B = 0.006467 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.057105 B = 4328.852470 C = 4543.957402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.034 3.966 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.123 4.123 8 H 0.100 0.900 9 C 0.003 3.997 10 N -0.446 5.446 11 C 0.023 3.977 12 C -0.004 4.004 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.265 1.265 20 H -0.289 1.289 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 10.825 -16.316 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.145 4.145 7 C -0.142 4.142 8 H 0.118 0.882 9 C -0.125 4.125 10 N -0.167 5.167 11 C -0.105 4.105 12 C -0.042 4.042 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.190 1.190 20 H -0.215 1.215 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.703 10.686 -15.862 19.316 hybrid contribution -0.207 -0.713 -0.107 0.750 sum 2.496 9.972 -15.969 18.992 Atomic orbital electron populations 1.22723 0.95655 1.02570 1.03261 1.22257 0.93531 0.94112 0.95834 1.21242 1.00234 0.93694 0.97366 1.21685 1.01130 0.98472 0.94340 1.21436 1.01241 0.95246 0.97124 1.21453 1.00362 0.94988 0.97709 1.22807 1.00297 0.97401 0.93708 0.88193 1.23717 1.00257 0.96916 0.91630 1.69521 1.43370 1.02338 1.01463 1.22765 0.95323 1.00146 0.92224 1.19462 0.96923 0.91850 0.95964 1.21104 1.17830 1.06584 1.10348 0.91204 1.24994 0.96048 0.97727 0.94598 1.69916 1.40046 1.25670 1.18782 0.86751 0.82553 0.80078 0.79762 1.20260 1.18982 1.21483 0.90970 0.91494 0.91446 0.92130 0.91304 0.92240 0.91618 0.92385 0.92451 0.92150 0.91316 0.90456 0.90135 0.93551 0.91672 0.96458 0.96798 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 6.33 37.16 0.24 -2.27 16 2 C 0.03 0.49 1.55 -151.73 -0.23 0.26 16 3 C -0.09 -1.10 5.82 -26.85 -0.16 -1.26 16 4 C -0.12 -1.19 5.51 -26.39 -0.15 -1.33 16 5 C -0.11 -1.07 5.78 -26.56 -0.15 -1.22 16 6 C -0.11 -1.13 5.87 -26.83 -0.16 -1.29 16 7 C -0.12 -1.62 3.65 -91.38 -0.33 -1.96 16 8 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 9 C 0.00 0.04 6.76 -22.80 -0.15 -0.11 16 10 N -0.45 -8.08 6.37 -292.33 -1.86 -9.94 16 11 C 0.02 0.48 4.18 -3.82 -0.02 0.47 16 12 C 0.00 -0.11 4.20 -27.89 -0.12 -0.22 16 13 C -0.52 -15.25 9.66 -34.44 -0.33 -15.59 16 14 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 17 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 22 H 0.07 0.77 5.22 -51.93 -0.27 0.50 16 23 H 0.07 0.89 4.88 -51.93 -0.25 0.64 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.65 5.77 -51.93 -0.30 0.35 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.72 6.08 -51.93 -0.32 0.41 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.24 5.30 -51.93 -0.28 0.97 16 34 H 0.05 0.95 5.34 -51.93 -0.28 0.68 16 35 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.02 0.44 7.57 -51.92 -0.39 0.05 16 37 H 0.01 0.35 6.89 -51.93 -0.36 -0.01 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 275.93 15.07 4.16 4.16 Total: -1.00 -30.91 275.93 -9.41 -40.32 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.14 Total: -2.08 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.66 Total: -22.60 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -1.09 Total: -37.60 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.91 -9.41 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707187708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.538 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds