Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.51456 * 111.15482 * 2 1 4 4 C 1.54261 * 105.75668 * 304.16351 * 3 2 1 5 5 C 1.52371 * 112.13138 * 303.25520 * 4 3 2 6 6 C 1.53953 * 112.56099 * 53.52031 * 5 4 3 7 7 C 1.51820 * 106.23503 * 303.19455 * 6 5 4 8 8 H 1.08999 * 112.98608 * 299.33522 * 7 6 5 9 9 C 1.50437 * 124.10097 * 153.47968 * 7 6 5 10 10 N 1.43575 * 112.05640 * 147.24810 * 2 1 3 11 11 C 1.46904 * 110.99812 * 323.58468 * 10 2 1 12 12 C 1.52995 * 109.47459 * 169.99968 * 11 10 2 13 13 C 1.50693 * 109.47694 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99414 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00753 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00530 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99487 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46818 * 90.00376 * 17 15 13 19 19 H 1.48499 * 109.47250 * 330.00641 * 17 15 13 20 20 H 1.48498 * 109.47184 * 209.99992 * 17 15 13 21 21 H 1.09005 * 109.46703 * 265.99815 * 1 2 3 22 22 H 1.08997 * 109.47512 * 25.99774 * 1 2 3 23 23 H 1.09006 * 109.47196 * 146.00385 * 1 2 3 24 24 H 1.09003 * 110.18652 * 63.22025 * 3 2 1 25 25 H 1.08995 * 110.18356 * 185.10410 * 3 2 1 26 26 H 1.08998 * 108.94987 * 182.57557 * 4 3 2 27 27 H 1.09001 * 108.94838 * 63.93629 * 4 3 2 28 28 H 1.09002 * 108.86708 * 292.72418 * 5 4 3 29 29 H 1.09000 * 108.78051 * 174.25729 * 5 4 3 30 30 H 1.08990 * 110.09696 * 184.01386 * 6 5 4 31 31 H 1.09003 * 110.09296 * 62.36704 * 6 5 4 32 32 H 1.09004 * 113.93990 * 107.59476 * 9 7 6 33 33 H 1.08999 * 113.94309 * 335.63808 * 9 7 6 34 34 H 1.08998 * 109.47094 * 49.99490 * 11 10 2 35 35 H 1.09003 * 109.46956 * 290.00212 * 11 10 2 36 36 H 1.09007 * 109.47309 * 59.99833 * 12 11 10 37 37 H 1.09003 * 109.47236 * 300.00073 * 12 11 10 38 38 H 0.96996 * 119.99923 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0766 1.4125 0.0000 4 6 1.4502 2.1040 -1.2285 5 6 1.7490 1.3568 -2.5223 6 6 1.3511 -0.1287 -2.4519 7 6 2.0981 -0.7125 -1.2661 8 1 3.1810 -0.6416 -1.3684 9 6 1.6269 -1.9022 -0.4751 10 7 2.0691 -1.1191 0.7199 11 6 1.2439 -1.4376 1.8928 12 6 1.6972 -2.7719 2.4883 13 6 0.8511 -3.0983 3.6918 14 1 0.0680 -2.4217 4.0008 15 6 1.0766 -4.2605 4.3986 16 7 0.3379 -4.5455 5.4486 17 14 2.4307 -5.4310 3.8636 18 1 3.6989 -5.0648 4.5441 19 1 2.6133 -5.3377 2.3929 20 1 2.0565 -6.8208 4.2289 21 1 -0.3633 -0.0717 1.0252 22 1 -0.3634 0.9236 -0.4504 23 1 -0.3634 -0.8521 -0.5746 24 1 1.7824 1.9296 0.9133 25 1 3.1626 1.3955 -0.0910 26 1 1.8464 3.1166 -1.3049 27 1 0.3701 2.1576 -1.0920 28 1 2.8167 1.4262 -2.7309 29 1 1.1999 1.8306 -3.3360 30 1 1.6461 -0.6393 -3.3685 31 1 0.2758 -0.2215 -2.2995 32 1 2.2077 -2.8079 -0.6500 33 1 0.5504 -2.0668 -0.5225 34 1 0.1985 -1.5100 1.5927 35 1 1.3539 -0.6506 2.6389 36 1 2.7426 -2.6995 2.7885 37 1 1.5872 -3.5589 1.7422 38 1 0.4964 -5.3633 5.9455 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707187708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 35.575980 kcal Electronic energy + Delta-G solvation = -16115.885079 eV Core-core repulsion = 13766.314614 eV Total energy + Delta-G solvation = -2349.570465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.15608 -37.10112 -35.29622 -33.17899 -32.10273 -29.57859 -28.89567 -26.54392 -25.45197 -22.66846 -21.74259 -21.14606 -19.17384 -18.74408 -17.08802 -16.66955 -16.19010 -16.01143 -15.78830 -14.88530 -14.78024 -14.58079 -13.97562 -13.71476 -13.39213 -13.33579 -12.87216 -12.67039 -12.56652 -12.36869 -12.20211 -11.94015 -11.93225 -11.69183 -11.56239 -11.42097 -11.03439 -10.91988 -10.79950 -10.17857 -9.70898 -8.33920 -6.38333 1.32846 1.33656 1.47017 2.32815 2.87263 3.01323 3.41758 3.77709 4.00929 4.03331 4.10654 4.23809 4.34690 4.37247 4.44318 4.53153 4.60937 4.66790 4.76313 4.81966 4.83707 4.93595 4.98122 5.05045 5.12814 5.21858 5.23526 5.30965 5.34802 5.38286 5.41569 5.44028 5.58936 5.65140 5.69570 6.21977 6.27079 6.68444 7.26752 8.82836 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053724 B = 0.006467 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.057105 B = 4328.852470 C = 4543.957402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.023 3.977 3 C -0.089 4.089 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.103 4.103 7 C -0.103 4.103 8 H 0.098 0.902 9 C -0.004 4.004 10 N -0.467 5.467 11 C 0.037 3.963 12 C 0.004 3.996 13 C -0.534 4.534 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.251 1.251 20 H -0.279 1.279 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.011 0.989 37 H 0.016 0.984 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 11.285 -18.991 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 C -0.127 4.127 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.141 4.141 7 C -0.122 4.122 8 H 0.116 0.884 9 C -0.132 4.132 10 N -0.188 5.188 11 C -0.091 4.091 12 C -0.034 4.034 13 C -0.572 4.572 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.175 1.175 20 H -0.204 1.204 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.035 0.965 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.640 11.163 -18.551 21.955 hybrid contribution -0.547 -0.796 0.766 1.233 sum 3.093 10.367 -17.785 20.817 Atomic orbital electron populations 1.22683 0.94986 1.04058 1.01969 1.22434 0.94143 0.94470 0.95718 1.21310 1.00178 0.92646 0.98569 1.21665 1.01117 0.99054 0.93267 1.21438 1.01871 0.94254 0.97262 1.21479 1.00090 0.95720 0.96826 1.22687 1.00381 0.94903 0.94239 0.88427 1.23819 1.00480 0.97652 0.91257 1.69534 1.43209 1.04968 1.01137 1.22452 0.95810 0.97416 0.93396 1.19324 0.95602 0.94099 0.94372 1.21405 1.17601 1.06196 1.12046 0.94988 1.25955 0.98725 0.99680 0.94484 1.70054 1.42037 1.26656 1.20172 0.85636 0.79115 0.77688 0.80061 1.19336 1.17520 1.20401 0.93444 0.89057 0.91080 0.93084 0.91695 0.90627 0.91234 0.92007 0.90321 0.90616 0.91053 0.90968 0.89830 0.93570 0.93366 0.97043 0.96548 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.67 6.33 71.98 0.46 -4.22 16 2 C 0.02 0.65 1.55 -7.75 -0.01 0.64 16 3 C -0.09 -2.10 5.82 30.52 0.18 -1.92 16 4 C -0.11 -1.90 5.51 30.81 0.17 -1.73 16 5 C -0.11 -1.65 5.78 30.71 0.18 -1.47 16 6 C -0.10 -1.81 5.87 30.53 0.18 -1.63 16 7 C -0.10 -2.49 3.65 -10.80 -0.04 -2.53 16 8 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 9 C 0.00 -0.13 6.76 72.53 0.49 0.36 16 10 N -0.47 -16.76 6.37 ******* -6.88 -23.64 16 11 C 0.04 1.61 4.18 86.30 0.36 1.97 16 12 C 0.00 0.19 4.20 29.84 0.13 0.32 16 13 C -0.53 -32.31 9.66 25.60 0.25 -32.06 16 14 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 15 C 0.01 0.53 5.47 84.65 0.46 0.99 16 16 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 17 Si 0.95 46.33 27.47 68.60 1.88 48.22 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H 0.05 1.47 5.99 -2.38 -0.01 1.45 16 22 H 0.09 1.90 5.22 -2.39 -0.01 1.89 16 23 H 0.07 1.78 4.88 -2.38 -0.01 1.77 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.13 5.77 -2.39 -0.01 1.11 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.24 6.08 -2.39 -0.01 1.23 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.49 5.30 -2.39 -0.01 2.47 16 34 H 0.05 1.96 5.34 -2.39 -0.01 1.95 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 37 H 0.02 0.81 6.89 -2.39 -0.02 0.80 16 38 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -67.58 275.93 -0.93 -68.51 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.97 Total: 8.85 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 2.79 Total: -41.29 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -6.58 Total: -84.29 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.22 kcal Total: -67.58 -0.93 -68.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707187708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.085 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds