Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48496 * 109.46971 * 269.99626 * 3 2 1 5 5 H 1.48495 * 109.47203 * 29.99526 * 3 2 1 6 6 H 1.48498 * 109.47074 * 150.00051 * 3 2 1 7 7 C 1.37877 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46750 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46663 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99906 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47403 * 35.00147 * 12 11 10 14 14 C 1.52948 * 109.47679 * 274.98849 * 12 11 10 15 15 C 1.52953 * 109.81823 * 177.01459 * 14 12 11 16 16 C 1.53176 * 109.44789 * 62.98741 * 15 14 12 17 17 C 1.53153 * 108.88449 * 303.42715 * 16 15 14 18 18 C 1.52799 * 117.75408 * 199.63505 * 17 16 15 19 19 C 1.52840 * 117.67671 * 268.52194 * 17 16 15 20 20 C 1.53159 * 115.00263 * 53.94482 * 17 16 15 21 21 H 0.97002 * 119.99914 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47019 * 60.00319 * 9 7 2 23 23 H 1.09001 * 109.47012 * 300.00062 * 9 7 2 24 24 H 1.09000 * 109.47262 * 60.00268 * 10 9 7 25 25 H 1.08994 * 109.46940 * 299.99865 * 10 9 7 26 26 H 1.00898 * 111.00574 * 303.94893 * 11 10 9 27 27 H 1.08997 * 109.41541 * 297.12217 * 14 12 11 28 28 H 1.08999 * 109.41186 * 56.90912 * 14 12 11 29 29 H 1.09008 * 109.47230 * 302.99334 * 15 14 12 30 30 H 1.08997 * 109.47819 * 182.99084 * 15 14 12 31 31 H 1.09002 * 109.56939 * 183.61117 * 16 15 14 32 32 H 1.09004 * 109.56987 * 63.25254 * 16 15 14 33 33 H 1.09001 * 117.50652 * 215.10688 * 18 17 16 34 34 H 1.09000 * 117.50235 * 0.14451 * 18 17 16 35 35 H 1.09001 * 117.50382 * 359.71417 * 19 17 16 36 36 H 1.09000 * 117.50636 * 144.77295 * 19 17 16 37 37 H 1.08999 * 109.56734 * 186.23344 * 20 17 16 38 38 H 1.09003 * 109.66539 * 65.93588 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5106 -4.9342 0.0033 12 6 2.4351 -6.0759 0.0037 13 1 3.3180 -5.8284 0.5930 14 6 2.8534 -6.3939 -1.4327 15 6 3.8734 -7.5336 -1.4356 16 6 3.2238 -8.8008 -0.8712 17 6 2.6836 -8.4991 0.5298 18 6 2.4137 -9.6822 1.4584 19 6 3.6077 -8.7610 1.7186 20 6 1.7392 -7.2962 0.6142 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5575 -0.8880 23 1 0.6246 -2.5562 0.8920 24 1 2.8718 -3.6036 0.8927 25 1 2.8718 -3.6051 -0.8873 26 1 0.8740 -4.9839 0.7844 27 1 1.9766 -6.6909 -2.0081 28 1 3.2989 -5.5078 -1.8849 29 1 4.7284 -7.2576 -0.8183 30 1 4.2073 -7.7200 -2.4563 31 1 3.9663 -9.5966 -0.8125 32 1 2.4043 -9.1108 -1.5196 33 1 1.5628 -9.6068 2.1355 34 1 2.6226 -10.6809 1.0749 35 1 4.6021 -9.1538 1.5063 36 1 3.5423 -8.0796 2.5668 37 1 1.4974 -7.0945 1.6578 38 1 0.8239 -7.5090 0.0619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709952717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -7.126226 kcal Electronic energy + Delta-G solvation = -15287.057519 eV Core-core repulsion = 12935.635347 eV Total energy + Delta-G solvation = -2351.422171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49904 -36.22147 -33.89628 -32.67581 -30.46427 -27.83984 -27.22186 -23.97824 -22.61165 -22.21000 -20.68975 -20.18823 -18.53672 -16.30161 -15.53074 -15.35214 -14.88254 -14.47733 -14.32757 -13.70188 -13.36674 -12.94376 -12.79712 -12.49175 -12.04438 -11.66167 -11.56830 -11.23223 -11.09440 -10.97773 -10.84123 -10.72570 -10.62486 -10.32186 -9.95524 -9.89889 -9.54510 -9.27606 -9.09102 -8.32834 -7.74909 -5.97362 -3.99781 3.33711 3.39614 3.42937 3.67810 4.41528 4.51767 4.66559 4.70016 4.83117 5.13958 5.22872 5.26220 5.36971 5.38629 5.51572 5.53683 5.59883 5.73471 5.79544 5.84978 5.96732 6.03077 6.09712 6.16900 6.23236 6.33843 6.38730 6.45123 6.48259 6.64090 7.04251 7.56258 7.77463 7.87463 8.02610 8.12940 8.47080 9.07626 9.63862 11.14129 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053223 B = 0.004744 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.964761 B = 5900.611199 C = 6035.521843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.690 5.690 12 C 0.091 3.909 13 H 0.037 0.963 14 C -0.106 4.106 15 C -0.116 4.116 16 C -0.080 4.080 17 C -0.115 4.115 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.082 4.082 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.057 0.943 26 H 0.335 0.665 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -18.088 0.739 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.320 5.320 12 C -0.019 4.019 13 H 0.055 0.945 14 C -0.144 4.144 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.215 4.215 19 C -0.214 4.214 20 C -0.120 4.120 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.667 -17.957 0.061 18.831 hybrid contribution 0.788 1.002 1.005 1.623 sum 6.455 -16.955 1.067 18.173 Atomic orbital electron populations 1.69975 1.06033 1.26543 1.50753 1.24999 0.94830 0.99183 0.95330 0.86594 0.79800 0.83490 0.78117 1.20625 1.21223 1.19941 1.21189 0.92971 0.91067 1.50757 0.92809 1.19072 0.94047 0.90481 0.97655 1.22178 0.96891 0.88551 0.98477 1.60607 1.19780 1.02010 1.49624 1.21441 0.94376 0.90302 0.95802 0.94483 1.21471 0.98596 0.97580 0.96774 1.21524 0.98505 0.95018 1.00361 1.21145 0.99504 0.97409 0.93656 1.21455 1.01157 0.96920 0.92006 1.22975 1.00128 0.95045 1.03359 1.23014 0.95046 1.03264 1.00037 1.21318 0.97624 0.92541 1.00469 0.93019 0.95668 0.96886 0.96844 0.92413 0.84722 0.91562 0.91881 0.92229 0.92039 0.92275 0.91496 0.88969 0.89073 0.89092 0.89008 0.92226 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 11 N -0.69 -12.64 6.31 -106.66 -0.67 -13.31 16 12 C 0.09 1.37 2.50 -67.65 -0.17 1.20 16 13 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 14 C -0.11 -1.50 5.34 -26.78 -0.14 -1.64 16 15 C -0.12 -1.32 5.93 -26.66 -0.16 -1.48 16 16 C -0.08 -0.82 5.67 -26.56 -0.15 -0.97 16 17 C -0.11 -1.26 1.97 -154.53 -0.31 -1.56 16 18 C -0.18 -1.70 9.99 -26.82 -0.27 -1.97 16 19 C -0.18 -1.80 9.93 -26.80 -0.27 -2.06 16 20 C -0.08 -1.04 4.94 -26.56 -0.13 -1.17 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 25 H 0.06 1.26 7.38 -51.93 -0.38 0.88 16 26 H 0.34 5.94 8.36 -39.29 -0.33 5.61 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.98 7.38 -51.93 -0.38 0.60 16 29 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -29.88 302.74 -9.52 -39.40 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.95 Total: 0.49 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.17 Total: -21.49 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.06 Total: -39.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.88 -9.52 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.273 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds