Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48496 * 109.46971 * 269.99626 * 3 2 1 5 5 H 1.48495 * 109.47203 * 29.99526 * 3 2 1 6 6 H 1.48498 * 109.47074 * 150.00051 * 3 2 1 7 7 C 1.37877 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46750 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46663 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99906 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47403 * 35.00147 * 12 11 10 14 14 C 1.52948 * 109.47679 * 274.98849 * 12 11 10 15 15 C 1.52953 * 109.81823 * 177.01459 * 14 12 11 16 16 C 1.53176 * 109.44789 * 62.98741 * 15 14 12 17 17 C 1.53153 * 108.88449 * 303.42715 * 16 15 14 18 18 C 1.52799 * 117.75408 * 199.63505 * 17 16 15 19 19 C 1.52840 * 117.67671 * 268.52194 * 17 16 15 20 20 C 1.53159 * 115.00263 * 53.94482 * 17 16 15 21 21 H 0.97002 * 119.99914 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47019 * 60.00319 * 9 7 2 23 23 H 1.09001 * 109.47012 * 300.00062 * 9 7 2 24 24 H 1.09000 * 109.47262 * 60.00268 * 10 9 7 25 25 H 1.08994 * 109.46940 * 299.99865 * 10 9 7 26 26 H 1.00898 * 111.00574 * 303.94893 * 11 10 9 27 27 H 1.08997 * 109.41541 * 297.12217 * 14 12 11 28 28 H 1.08999 * 109.41186 * 56.90912 * 14 12 11 29 29 H 1.09008 * 109.47230 * 302.99334 * 15 14 12 30 30 H 1.08997 * 109.47819 * 182.99084 * 15 14 12 31 31 H 1.09002 * 109.56939 * 183.61117 * 16 15 14 32 32 H 1.09004 * 109.56987 * 63.25254 * 16 15 14 33 33 H 1.09001 * 117.50652 * 215.10688 * 18 17 16 34 34 H 1.09000 * 117.50235 * 0.14451 * 18 17 16 35 35 H 1.09001 * 117.50382 * 359.71417 * 19 17 16 36 36 H 1.09000 * 117.50636 * 144.77295 * 19 17 16 37 37 H 1.08999 * 109.56734 * 186.23344 * 20 17 16 38 38 H 1.09003 * 109.66539 * 65.93588 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5106 -4.9342 0.0033 12 6 2.4351 -6.0759 0.0037 13 1 3.3180 -5.8284 0.5930 14 6 2.8534 -6.3939 -1.4327 15 6 3.8734 -7.5336 -1.4356 16 6 3.2238 -8.8008 -0.8712 17 6 2.6836 -8.4991 0.5298 18 6 2.4137 -9.6822 1.4584 19 6 3.6077 -8.7610 1.7186 20 6 1.7392 -7.2962 0.6142 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5575 -0.8880 23 1 0.6246 -2.5562 0.8920 24 1 2.8718 -3.6036 0.8927 25 1 2.8718 -3.6051 -0.8873 26 1 0.8740 -4.9839 0.7844 27 1 1.9766 -6.6909 -2.0081 28 1 3.2989 -5.5078 -1.8849 29 1 4.7284 -7.2576 -0.8183 30 1 4.2073 -7.7200 -2.4563 31 1 3.9663 -9.5966 -0.8125 32 1 2.4043 -9.1108 -1.5196 33 1 1.5628 -9.6068 2.1355 34 1 2.6226 -10.6809 1.0749 35 1 4.6021 -9.1538 1.5063 36 1 3.5423 -8.0796 2.5668 37 1 1.4974 -7.0945 1.6578 38 1 0.8239 -7.5090 0.0619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709952717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -24.443216 kcal Electronic energy + Delta-G solvation = -15287.808440 eV Core-core repulsion = 12935.635347 eV Total energy + Delta-G solvation = -2352.173092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47466 -37.57354 -35.50310 -34.33515 -32.05741 -29.42139 -28.26312 -25.96014 -23.42005 -23.19332 -22.54013 -21.42622 -19.48828 -18.50817 -16.86691 -16.40607 -16.29767 -16.12780 -15.58605 -14.86781 -14.70412 -14.54138 -14.09748 -13.80782 -13.39741 -13.22933 -12.91280 -12.56909 -12.48633 -12.42714 -12.25359 -12.05116 -11.82252 -11.71073 -11.54694 -11.36556 -11.06526 -10.79884 -10.57527 -10.38599 -9.28869 -8.21347 -6.33251 1.39596 1.41534 1.52526 2.39810 2.86048 3.11936 3.27496 3.71121 3.82081 3.96478 4.16420 4.21855 4.28468 4.32911 4.46195 4.53544 4.59280 4.63523 4.68448 4.81579 4.93986 5.03028 5.05563 5.08546 5.11759 5.14439 5.30137 5.31388 5.33331 5.41943 5.45101 5.52731 5.66418 5.78469 6.14733 6.30003 6.56162 6.83736 7.36139 8.90935 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053223 B = 0.004744 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.964761 B = 5900.611199 C = 6035.521843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.695 5.695 12 C 0.091 3.909 13 H 0.030 0.970 14 C -0.105 4.105 15 C -0.110 4.110 16 C -0.076 4.076 17 C -0.129 4.129 18 C -0.165 4.165 19 C -0.178 4.178 20 C -0.075 4.075 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.009 1.009 24 H 0.014 0.986 25 H 0.055 0.945 26 H 0.337 0.663 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -19.093 0.841 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.326 5.326 12 C -0.018 4.018 13 H 0.048 0.952 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.202 4.202 19 C -0.215 4.215 20 C -0.113 4.113 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.009 0.991 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.155 0.845 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.069 -18.986 0.163 20.260 hybrid contribution 0.305 1.286 0.978 1.644 sum 7.374 -17.701 1.141 19.209 Atomic orbital electron populations 1.70109 1.07852 1.27854 1.51346 1.25982 0.95774 1.03390 0.94507 0.85407 0.78603 0.78210 0.78575 1.19672 1.20539 1.18753 1.21606 0.93476 0.92301 1.51103 0.92294 1.18922 0.94280 0.92314 0.95012 1.21775 0.95508 0.88580 0.98311 1.60553 1.20343 1.01752 1.49914 1.21530 0.93603 0.89935 0.96730 0.95217 1.21461 0.99164 0.98030 0.95657 1.21482 0.97513 0.94395 1.01416 1.21138 0.99978 0.97144 0.93051 1.21424 1.01607 0.96961 0.92924 1.23045 0.99736 0.95187 1.02214 1.23070 0.95834 1.03388 0.99234 1.21220 0.97747 0.92272 1.00050 0.92684 0.98748 0.99063 0.96781 0.92667 0.84470 0.92030 0.93871 0.92336 0.90623 0.90341 0.91229 0.88812 0.87436 0.87959 0.89693 0.92231 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.09 3.87 5.42 86.31 0.47 4.34 16 11 N -0.69 -25.96 6.31 -491.35 -3.10 -29.06 16 12 C 0.09 2.74 2.50 44.96 0.11 2.85 16 13 H 0.03 0.95 7.80 -2.39 -0.02 0.93 16 14 C -0.10 -2.92 5.34 30.56 0.16 -2.75 16 15 C -0.11 -2.31 5.93 30.64 0.18 -2.12 16 16 C -0.08 -1.37 5.67 30.70 0.17 -1.19 16 17 C -0.13 -2.55 1.97 -52.20 -0.10 -2.65 16 18 C -0.16 -2.70 9.99 30.54 0.31 -2.39 16 19 C -0.18 -3.22 9.93 30.55 0.30 -2.92 16 20 C -0.08 -1.84 4.94 30.71 0.15 -1.69 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.01 0.62 8.06 -2.39 -0.02 0.60 16 25 H 0.05 2.46 7.38 -2.39 -0.02 2.45 16 26 H 0.34 12.24 8.36 -89.70 -0.75 11.49 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.35 7.38 -2.39 -0.02 1.33 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.24 302.74 2.07 -62.17 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.25 Total: 15.40 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.61 Total: -37.90 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.81 Total: -86.62 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.24 2.07 -62.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.726 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds