Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47461 * 325.00870 * 12 11 10 14 14 C 1.52944 * 109.47443 * 85.02348 * 12 11 10 15 15 C 1.52944 * 109.82130 * 182.98430 * 14 12 11 16 16 C 1.53185 * 109.44417 * 297.01073 * 15 14 12 17 17 C 1.53152 * 108.88303 * 56.57382 * 16 15 14 18 18 C 1.52843 * 117.67346 * 91.48012 * 17 16 15 19 19 C 1.52800 * 117.75269 * 160.35956 * 17 16 15 20 20 C 1.53147 * 115.00390 * 306.05479 * 17 16 15 21 21 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 27 27 H 1.08998 * 109.41536 * 303.09173 * 14 12 11 28 28 H 1.09005 * 109.41007 * 62.87819 * 14 12 11 29 29 H 1.09000 * 109.47535 * 177.02226 * 15 14 12 30 30 H 1.09000 * 109.48053 * 57.00663 * 15 14 12 31 31 H 1.09004 * 109.57052 * 296.75321 * 16 15 14 32 32 H 1.09009 * 109.56588 * 176.39035 * 16 15 14 33 33 H 1.09011 * 117.50245 * 215.22805 * 18 17 16 34 34 H 1.09000 * 117.50917 * 0.27466 * 18 17 16 35 35 H 1.09006 * 117.50432 * 359.85486 * 19 17 16 36 36 H 1.09003 * 117.50292 * 144.89789 * 19 17 16 37 37 H 1.09002 * 109.56884 * 294.12381 * 20 17 16 38 38 H 1.08998 * 109.66750 * 173.82334 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0169 -4.0081 -0.0014 13 1 5.3611 -4.6492 0.5876 14 6 6.0829 -4.5284 -1.4381 15 6 6.5598 -5.9816 -1.4420 16 6 7.9822 -6.0530 -0.8779 17 6 7.9913 -5.4352 0.5234 18 6 7.7563 -6.3674 1.7117 19 6 9.1509 -5.7937 1.4516 20 6 7.4218 -4.0161 0.6090 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8910 24 1 3.6584 -3.1503 0.8892 25 1 3.6578 -3.1506 -0.8908 26 1 5.8520 -2.1105 0.7804 27 1 5.0927 -4.4709 -1.8902 28 1 6.7786 -3.9172 -2.0132 29 1 6.5543 -6.3631 -2.4631 30 1 5.8935 -6.5845 -0.8251 31 1 8.6603 -5.4977 -1.5261 32 1 8.3002 -7.0940 -0.8200 33 1 7.1989 -5.9705 2.5603 34 1 7.5991 -7.4247 1.4987 35 1 9.9113 -6.4738 1.0676 36 1 9.5111 -5.0196 2.1292 37 1 8.0641 -3.3310 0.0557 38 1 7.3684 -3.7045 1.6521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709952721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -3.841165 kcal Electronic energy + Delta-G solvation = -15331.741442 eV Core-core repulsion = 12980.461721 eV Total energy + Delta-G solvation = -2351.279721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55400 -36.32706 -33.96462 -32.65222 -30.74621 -28.20460 -27.31897 -23.93760 -22.64806 -22.26458 -20.51062 -20.25745 -18.58441 -16.72757 -15.61440 -15.43266 -14.97070 -14.45928 -14.19959 -13.77778 -13.36816 -13.09327 -12.91802 -12.56219 -12.39539 -11.71149 -11.64993 -11.37037 -11.27409 -11.07547 -10.91152 -10.75362 -10.55771 -10.08308 -9.97920 -9.77008 -9.72119 -9.45710 -9.19120 -8.51387 -7.88462 -6.02268 -4.00387 3.34666 3.41211 3.46316 3.63643 4.39575 4.48346 4.61054 4.63804 4.78753 5.07148 5.18203 5.21089 5.30637 5.32626 5.46350 5.50087 5.54096 5.67439 5.76270 5.80095 5.92418 5.99541 6.05052 6.10139 6.16180 6.25321 6.27608 6.37010 6.38818 6.56319 6.83547 7.19427 7.42394 7.66410 7.80566 7.96532 8.55908 9.02020 9.60341 11.11174 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049434 B = 0.005082 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.273833 B = 5507.790783 C = 5670.965866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.075 3.925 11 N -0.693 5.693 12 C 0.091 3.909 13 H 0.040 0.960 14 C -0.106 4.106 15 C -0.116 4.116 16 C -0.080 4.080 17 C -0.115 4.115 18 C -0.176 4.176 19 C -0.178 4.178 20 C -0.082 4.082 21 H 0.263 0.737 22 H 0.012 0.988 23 H 0.021 0.979 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.334 0.666 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.722 -11.598 0.741 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.323 5.323 12 C -0.019 4.019 13 H 0.058 0.942 14 C -0.145 4.145 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.213 4.213 19 C -0.215 4.215 20 C -0.120 4.120 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.595 -11.403 0.060 20.967 hybrid contribution 0.087 0.611 0.993 1.170 sum 17.682 -10.792 1.053 20.742 Atomic orbital electron populations 1.69919 1.06328 1.26885 1.51250 1.25010 0.94724 0.99205 0.94495 0.86728 0.80262 0.83408 0.78568 1.20235 1.21524 1.19012 1.21086 0.89442 0.94491 1.50894 0.91157 1.19550 0.96620 0.91969 0.96655 1.21982 0.84186 0.99840 0.99356 1.60622 1.09832 1.12343 1.49529 1.21441 0.94101 0.90379 0.95976 0.94231 1.21474 1.01768 0.94581 0.96640 1.21524 0.96007 0.97451 1.00454 1.21148 0.97500 0.99461 0.93604 1.21447 1.02026 0.96046 0.92069 1.23018 0.99320 0.98988 0.99985 1.22976 0.91609 1.03596 1.03319 1.21314 0.96344 0.93852 1.00442 0.92755 0.96938 0.96115 0.96148 0.91787 0.84830 0.91774 0.91585 0.91974 0.92139 0.91521 0.92221 0.88990 0.89038 0.89046 0.88992 0.90747 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.55 5.42 -3.82 -0.02 1.53 16 11 N -0.69 -11.92 6.31 -106.65 -0.67 -12.59 16 12 C 0.09 1.31 2.50 -67.65 -0.17 1.14 16 13 H 0.04 0.61 7.80 -51.93 -0.41 0.21 16 14 C -0.11 -1.44 5.34 -26.79 -0.14 -1.58 16 15 C -0.12 -1.28 5.93 -26.66 -0.16 -1.44 16 16 C -0.08 -0.79 5.67 -26.56 -0.15 -0.94 16 17 C -0.12 -1.21 1.97 -154.54 -0.31 -1.51 16 18 C -0.18 -1.73 9.93 -26.80 -0.27 -2.00 16 19 C -0.18 -1.63 9.99 -26.82 -0.27 -1.90 16 20 C -0.08 -0.98 4.93 -26.56 -0.13 -1.11 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 24 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 25 H 0.06 1.36 7.39 -51.93 -0.38 0.98 16 26 H 0.33 5.45 8.36 -39.29 -0.33 5.12 16 27 H 0.06 0.96 7.39 -51.93 -0.38 0.58 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.53 8.09 -51.92 -0.42 0.11 16 33 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -30.34 299.14 -9.14 -39.48 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.92 Total: 0.43 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.16 Total: -21.81 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.10 Total: -40.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.34 -9.14 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.637 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds