Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47461 * 325.00870 * 12 11 10 14 14 C 1.52944 * 109.47443 * 85.02348 * 12 11 10 15 15 C 1.52944 * 109.82130 * 182.98430 * 14 12 11 16 16 C 1.53185 * 109.44417 * 297.01073 * 15 14 12 17 17 C 1.53152 * 108.88303 * 56.57382 * 16 15 14 18 18 C 1.52843 * 117.67346 * 91.48012 * 17 16 15 19 19 C 1.52800 * 117.75269 * 160.35956 * 17 16 15 20 20 C 1.53147 * 115.00390 * 306.05479 * 17 16 15 21 21 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 27 27 H 1.08998 * 109.41536 * 303.09173 * 14 12 11 28 28 H 1.09005 * 109.41007 * 62.87819 * 14 12 11 29 29 H 1.09000 * 109.47535 * 177.02226 * 15 14 12 30 30 H 1.09000 * 109.48053 * 57.00663 * 15 14 12 31 31 H 1.09004 * 109.57052 * 296.75321 * 16 15 14 32 32 H 1.09009 * 109.56588 * 176.39035 * 16 15 14 33 33 H 1.09011 * 117.50245 * 215.22805 * 18 17 16 34 34 H 1.09000 * 117.50917 * 0.27466 * 18 17 16 35 35 H 1.09006 * 117.50432 * 359.85486 * 19 17 16 36 36 H 1.09003 * 117.50292 * 144.89789 * 19 17 16 37 37 H 1.09002 * 109.56884 * 294.12381 * 20 17 16 38 38 H 1.08998 * 109.66750 * 173.82334 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0169 -4.0081 -0.0014 13 1 5.3611 -4.6492 0.5876 14 6 6.0829 -4.5284 -1.4381 15 6 6.5598 -5.9816 -1.4420 16 6 7.9822 -6.0530 -0.8779 17 6 7.9913 -5.4352 0.5234 18 6 7.7563 -6.3674 1.7117 19 6 9.1509 -5.7937 1.4516 20 6 7.4218 -4.0161 0.6090 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8910 24 1 3.6584 -3.1503 0.8892 25 1 3.6578 -3.1506 -0.8908 26 1 5.8520 -2.1105 0.7804 27 1 5.0927 -4.4709 -1.8902 28 1 6.7786 -3.9172 -2.0132 29 1 6.5543 -6.3631 -2.4631 30 1 5.8935 -6.5845 -0.8251 31 1 8.6603 -5.4977 -1.5261 32 1 8.3002 -7.0940 -0.8200 33 1 7.1989 -5.9705 2.5603 34 1 7.5991 -7.4247 1.4987 35 1 9.9113 -6.4738 1.0676 36 1 9.5111 -5.0196 2.1292 37 1 8.0641 -3.3310 0.0557 38 1 7.3684 -3.7045 1.6521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709952721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -22.216794 kcal Electronic energy + Delta-G solvation = -15332.538269 eV Core-core repulsion = 12980.461721 eV Total energy + Delta-G solvation = -2352.076548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48109 -37.61231 -35.47854 -34.37075 -32.35246 -29.69321 -28.27568 -25.81287 -23.42478 -23.20217 -22.31181 -21.45129 -19.49830 -18.94001 -16.87396 -16.33428 -16.30849 -16.07760 -15.58226 -15.03083 -14.73127 -14.55694 -14.41511 -13.84119 -13.44907 -13.30365 -13.03095 -12.57028 -12.47973 -12.26900 -12.04320 -11.91869 -11.88774 -11.74149 -11.60143 -11.42397 -11.15430 -10.80220 -10.78029 -10.39013 -9.33250 -8.31172 -6.36129 1.37024 1.38239 1.51107 2.36094 2.85284 3.04386 3.23130 3.71082 3.81559 3.96341 4.15458 4.21155 4.27833 4.31301 4.43390 4.50242 4.54742 4.60795 4.68590 4.81561 4.93150 4.93928 5.05076 5.07240 5.10803 5.12377 5.27014 5.30290 5.31473 5.35473 5.43597 5.46576 5.53704 5.62096 6.17097 6.25055 6.55125 6.72638 7.28912 8.85694 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049434 B = 0.005082 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.273833 B = 5507.790783 C = 5670.965866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.003 4.003 10 C 0.089 3.911 11 N -0.691 5.691 12 C 0.091 3.909 13 H 0.027 0.973 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.076 4.076 17 C -0.128 4.128 18 C -0.181 4.181 19 C -0.164 4.164 20 C -0.074 4.074 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.022 0.978 24 H 0.012 0.988 25 H 0.052 0.948 26 H 0.341 0.659 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.489 -11.447 0.868 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.575 4.575 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.040 4.040 11 N -0.322 5.322 12 C -0.019 4.019 13 H 0.045 0.955 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.218 4.218 19 C -0.201 4.201 20 C -0.112 4.112 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.160 0.840 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.383 -11.273 0.190 23.294 hybrid contribution -0.838 0.481 0.955 1.359 sum 19.545 -10.792 1.145 22.356 Atomic orbital electron populations 1.70068 1.08339 1.28288 1.52461 1.26016 0.95635 1.03603 0.93854 0.85571 0.79379 0.77895 0.79236 1.19212 1.20804 1.17032 1.21411 0.91972 0.93192 1.50882 0.95211 1.19433 0.93533 0.94381 0.96770 1.21631 0.86596 0.97268 0.98480 1.60557 1.07264 1.14417 1.49945 1.21521 0.95318 0.88354 0.96677 0.95462 1.21462 1.00624 0.96526 0.95755 1.21488 0.96816 0.95326 1.01339 1.21136 0.96476 1.00524 0.93144 1.21433 1.03478 0.95175 0.92798 1.23069 1.00040 0.99308 0.99377 1.23043 0.91358 1.03462 1.02189 1.21220 0.94488 0.95282 1.00221 0.92381 0.96178 0.95991 0.97000 0.92920 0.84036 0.94017 0.91596 0.90727 0.92625 0.91031 0.90566 0.89671 0.88216 0.87546 0.88635 0.90645 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 7 C -0.54 -31.99 9.66 25.60 0.25 -31.75 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.00 -0.16 4.30 29.85 0.13 -0.04 16 10 C 0.09 3.74 5.42 86.30 0.47 4.21 16 11 N -0.69 -23.24 6.31 -491.34 -3.10 -26.34 16 12 C 0.09 2.54 2.50 44.96 0.11 2.65 16 13 H 0.03 0.84 7.80 -2.39 -0.02 0.82 16 14 C -0.11 -2.79 5.34 30.56 0.16 -2.62 16 15 C -0.11 -2.28 5.93 30.64 0.18 -2.10 16 16 C -0.08 -1.30 5.67 30.71 0.17 -1.12 16 17 C -0.13 -2.39 1.97 -52.20 -0.10 -2.49 16 18 C -0.18 -3.16 9.93 30.55 0.30 -2.86 16 19 C -0.16 -2.51 9.99 30.54 0.31 -2.20 16 20 C -0.07 -1.65 4.93 30.70 0.15 -1.50 16 21 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 22 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 23 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 24 H 0.01 0.51 8.06 -2.39 -0.02 0.49 16 25 H 0.05 2.30 7.39 -2.39 -0.02 2.29 16 26 H 0.34 10.64 8.36 -89.70 -0.75 9.89 16 27 H 0.04 1.27 7.39 -2.39 -0.02 1.25 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 33 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -65.57 299.14 1.88 -63.69 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.20 Total: 14.93 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 2.60 Total: -39.00 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.80 Total: -86.83 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -65.57 1.88 -63.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.476 kcal (2) G-P(sol) polarization free energy of solvation -65.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds