Wall clock time and date at job start Mon Mar 30 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47568 * 270.00050 * 3 2 1 5 5 H 1.48499 * 109.46969 * 30.00449 * 3 2 1 6 6 H 1.48501 * 109.47215 * 150.00006 * 3 2 1 7 7 C 1.37881 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99954 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.53869 * 60.09617 * 9 7 2 11 11 C 1.53124 * 109.50396 * 299.99831 * 9 7 2 12 12 C 1.53126 * 109.15878 * 297.71607 * 11 9 7 13 13 C 1.53029 * 109.27795 * 302.34185 * 12 11 9 14 14 N 1.46854 * 109.52283 * 59.18140 * 13 12 11 15 15 C 1.46843 * 111.19690 * 298.25524 * 14 13 12 16 16 H 1.08997 * 109.46476 * 301.72927 * 15 14 13 17 17 C 1.52999 * 109.46014 * 181.74380 * 15 14 13 18 18 C 1.54268 * 110.03268 * 177.16811 * 17 15 14 19 19 C 1.54891 * 104.19609 * 217.10958 * 18 17 15 20 20 C 1.54892 * 102.75051 * 37.94312 * 19 18 17 21 21 C 1.53880 * 110.03062 * 60.00806 * 17 15 14 22 22 H 0.96996 * 119.99719 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.52745 * 177.80935 * 11 9 7 24 24 H 1.08999 * 109.52030 * 57.61391 * 11 9 7 25 25 H 1.08994 * 109.50285 * 62.28827 * 12 11 9 26 26 H 1.08998 * 109.50137 * 182.36505 * 12 11 9 27 27 H 1.08999 * 109.46487 * 179.19278 * 13 12 11 28 28 H 1.09001 * 109.46656 * 299.16371 * 13 12 11 29 29 H 1.00894 * 110.99814 * 174.16025 * 14 13 12 30 30 H 1.08992 * 110.02405 * 298.61136 * 17 15 14 31 31 H 1.09001 * 110.48389 * 335.78846 * 18 17 15 32 32 H 1.08997 * 110.48599 * 98.42542 * 18 17 15 33 33 H 1.08993 * 110.75362 * 279.62611 * 19 18 17 34 34 H 1.09005 * 110.75562 * 156.25655 * 19 18 17 35 35 H 1.08994 * 110.48546 * 203.38114 * 20 19 18 36 36 H 1.08997 * 110.59713 * 80.78949 * 20 19 18 37 37 H 1.09004 * 110.02624 * 238.57144 * 21 17 15 38 38 H 1.08991 * 110.03088 * 359.94240 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 0.0000 10 1 3.8757 -0.6825 0.8910 11 6 4.0233 -0.4716 -1.2493 12 6 3.5574 -1.2306 -2.4950 13 6 4.0670 -2.6720 -2.4283 14 7 3.5495 -3.3199 -1.2164 15 6 4.0225 -2.6366 -0.0057 16 1 5.1124 -2.6359 0.0086 17 6 3.4968 -3.3682 1.2309 18 6 4.0440 -2.7032 2.5108 19 6 4.3045 -3.8886 3.4732 20 6 4.8418 -4.9881 2.5237 21 6 4.0041 -4.8210 1.2392 22 1 -0.4849 0.8400 0.0004 23 1 5.1125 -0.4372 -1.2298 24 1 3.6262 0.5433 -1.2714 25 1 2.4682 -1.2311 -2.5346 26 1 3.9538 -0.7447 -3.3865 27 1 3.7250 -3.2191 -3.3068 28 1 5.1567 -2.6712 -2.4027 29 1 3.7932 -4.2988 -1.1976 30 1 2.4070 -3.3533 1.2382 31 1 4.9725 -2.1732 2.2982 32 1 3.3042 -2.0237 2.9338 33 1 3.3786 -4.2091 3.9506 34 1 5.0533 -3.6229 4.2194 35 1 4.6840 -5.9760 2.9562 36 1 5.8993 -4.8294 2.3128 37 1 3.1603 -5.5110 1.2512 38 1 4.6239 -5.0050 0.3617 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709964463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:30 Heat of formation + Delta-G solvation = -35.470554 kcal Electronic energy + Delta-G solvation = -16613.231733 eV Core-core repulsion = 14260.580459 eV Total energy + Delta-G solvation = -2352.651274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51655 -37.92952 -34.77184 -32.91710 -32.41810 -29.41154 -28.54904 -26.51734 -24.39160 -23.15151 -21.23604 -20.54367 -20.18752 -18.18469 -17.48831 -16.52213 -16.46770 -15.57830 -15.38557 -14.86549 -14.53820 -14.23030 -14.04042 -13.99949 -13.78452 -13.49347 -12.74853 -12.36526 -12.03599 -11.94758 -11.85873 -11.80796 -11.67256 -11.61811 -11.39112 -11.21533 -10.97997 -10.84643 -10.65733 -10.42798 -8.97216 -8.12509 -6.07255 1.29692 1.34899 1.43707 2.40473 3.21101 3.45444 3.83433 3.90386 4.05152 4.15406 4.25605 4.36633 4.52461 4.61782 4.65917 4.69210 4.75318 4.82803 4.87287 4.92363 4.99611 5.00368 5.05999 5.18943 5.20293 5.21951 5.29940 5.37707 5.51009 5.55674 5.61049 5.70754 5.78929 5.88503 6.41284 6.60085 6.87199 7.00407 7.52317 9.04726 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.011483 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.049924 B = 2437.742923 C = 2966.512754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.002 3.998 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.252 1.252 7 C -0.447 4.447 8 H 0.044 0.956 9 C 0.011 3.989 10 H 0.021 0.979 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.074 3.926 14 N -0.688 5.688 15 C 0.125 3.875 16 H 0.027 0.973 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.116 4.116 22 H 0.256 0.744 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.340 0.660 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.129 -7.894 1.223 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.192 4.192 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.237 1.237 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.062 0.938 9 C -0.009 4.009 10 H 0.039 0.961 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.056 4.056 14 N -0.322 5.322 15 C 0.016 3.984 16 H 0.045 0.955 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.154 4.154 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.408 -7.463 1.191 14.529 hybrid contribution 0.362 1.069 -0.121 1.135 sum 12.770 -6.394 1.070 14.322 Atomic orbital electron populations 1.70054 1.07855 1.26815 1.55511 1.25719 0.95175 1.01975 0.96324 0.86064 0.79129 0.80551 0.77818 1.20328 1.23685 1.17676 1.21036 0.90386 0.92324 1.44775 0.93774 1.19308 0.95044 0.93352 0.93154 0.96147 1.21940 0.98585 0.97929 0.97976 1.21408 1.00803 0.95722 0.96495 1.21765 0.96282 0.94628 0.92879 1.60042 1.64828 1.05679 1.01603 1.21254 0.93921 0.93782 0.89454 0.95513 1.21657 0.99743 0.94613 0.93644 1.22316 0.99848 0.97808 0.95363 1.22489 1.00919 0.95004 0.97363 1.22326 0.99373 0.98872 0.94714 1.22192 0.99374 0.95243 0.98548 0.93485 0.92382 0.95340 0.93738 0.91471 0.90208 0.94713 0.83987 0.93270 0.91935 0.93939 0.92009 0.90402 0.90488 0.91024 0.92204 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.61 13.96 21.45 0.30 -61.31 16 2 C 0.00 0.12 5.45 84.66 0.46 0.59 16 3 Si 0.93 46.82 24.39 68.60 1.67 48.49 16 4 H -0.28 -13.42 6.85 99.48 0.68 -12.74 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 6 H -0.25 -11.77 6.53 99.48 0.65 -11.12 16 7 C -0.45 -24.99 6.92 25.60 0.18 -24.81 16 8 H 0.04 2.79 6.86 -2.91 -0.02 2.77 16 9 C 0.01 0.48 1.51 -11.49 -0.02 0.46 16 10 H 0.02 0.97 6.37 -2.39 -0.02 0.95 16 11 C -0.13 -5.35 5.00 30.68 0.15 -5.20 16 12 C -0.11 -4.16 5.84 30.65 0.18 -3.99 16 13 C 0.07 2.41 6.55 86.32 0.57 2.97 16 14 N -0.69 -24.86 6.06 -491.69 -2.98 -27.84 16 15 C 0.13 4.72 1.43 44.94 0.06 4.79 16 16 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 17 C -0.08 -2.78 2.43 -10.07 -0.02 -2.81 16 18 C -0.12 -3.82 5.33 31.67 0.17 -3.65 16 19 C -0.12 -3.06 6.91 31.89 0.22 -2.83 16 20 C -0.12 -2.58 6.83 31.67 0.22 -2.37 16 21 C -0.12 -3.14 5.91 31.32 0.19 -2.96 16 22 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.03 1.29 3.24 -2.39 -0.01 1.29 16 25 H 0.04 2.11 7.35 -2.39 -0.02 2.09 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.34 10.26 6.97 -89.70 -0.62 9.64 16 30 H 0.05 2.21 6.57 -2.39 -0.02 2.19 16 31 H 0.06 1.99 7.75 -2.39 -0.02 1.97 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.63 6.48 -2.39 -0.02 1.62 16 Total: -1.00 -65.70 274.46 1.66 -64.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.32 Total: 16.41 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 2.35 Total: -39.80 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.68 Total: -89.15 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.49 kcal Total: -65.70 1.66 -64.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.572 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds