Wall clock time and date at job start Mon Mar 30 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48494 * 109.47344 * 239.99865 * 3 2 1 5 5 H 1.48506 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47428 * 119.99714 * 3 2 1 7 7 C 1.37876 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99784 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.50748 * 60.07602 * 9 7 2 11 11 C 1.53121 * 109.50411 * 299.99308 * 9 7 2 12 12 C 1.53118 * 109.15998 * 182.40705 * 11 9 7 13 13 C 1.53034 * 109.28068 * 57.65604 * 12 11 9 14 14 N 1.46848 * 109.52504 * 300.82023 * 13 12 11 15 15 C 1.46847 * 111.19556 * 61.74015 * 14 13 12 16 16 H 1.08999 * 109.46628 * 58.27319 * 15 14 13 17 17 C 1.53001 * 109.46201 * 178.24229 * 15 14 13 18 18 C 1.54272 * 110.03089 * 57.16470 * 17 15 14 19 19 C 1.54887 * 104.19673 * 217.10240 * 18 17 15 20 20 C 1.54894 * 102.74338 * 37.94443 * 19 18 17 21 21 C 1.53870 * 110.03270 * 300.00158 * 17 15 14 22 22 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.51709 * 62.50754 * 11 9 7 24 24 H 1.08992 * 109.57642 * 302.34233 * 11 9 7 25 25 H 1.09001 * 109.50624 * 297.71626 * 12 11 9 26 26 H 1.09002 * 109.53418 * 177.61821 * 12 11 9 27 27 H 1.09000 * 109.46341 * 180.80474 * 13 12 11 28 28 H 1.09003 * 109.45147 * 60.83100 * 13 12 11 29 29 H 1.00901 * 111.00066 * 185.83397 * 14 13 12 30 30 H 1.09004 * 110.01705 * 178.60722 * 17 15 14 31 31 H 1.08991 * 110.48681 * 335.79048 * 18 17 15 32 32 H 1.09007 * 110.48051 * 98.42847 * 18 17 15 33 33 H 1.08999 * 110.75974 * 279.63258 * 19 18 17 34 34 H 1.09004 * 110.91500 * 156.33093 * 19 18 17 35 35 H 1.09007 * 110.48361 * 203.37473 * 20 19 18 36 36 H 1.09003 * 110.59894 * 80.79652 * 20 19 18 37 37 H 1.09007 * 110.02966 * 238.56725 * 21 17 15 38 38 H 1.08994 * 110.03634 * 359.94589 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3701 -2.5808 1.2503 12 6 -0.3455 -3.9342 1.2731 13 6 0.6945 -5.0564 1.2417 14 7 1.5112 -4.9347 0.0273 15 6 2.2449 -3.6629 0.0061 16 1 2.8791 -3.5946 0.8899 17 6 3.1143 -3.5968 -1.2512 18 6 2.2374 -3.7642 -2.5094 19 6 3.1138 -4.6001 -3.4748 20 6 3.8193 -5.5956 -2.5206 21 6 4.1201 -4.7613 -1.2584 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3679 -1.7788 1.2287 24 1 0.9900 -2.4815 2.1412 25 1 -0.9961 -4.0166 0.4024 26 1 -0.9418 -4.0160 2.1819 27 1 0.1878 -6.0214 1.2434 28 1 1.3360 -4.9814 2.1198 29 1 2.1415 -5.7173 -0.0645 30 1 3.6445 -2.6451 -1.2886 31 1 1.3198 -4.2999 -2.2664 32 1 2.0084 -2.7924 -2.9468 33 1 3.8430 -3.9672 -3.9807 34 1 2.4967 -5.1312 -4.1996 35 1 4.7448 -5.9604 -2.9662 36 1 3.1592 -6.4286 -2.2790 37 1 5.1384 -4.3747 -1.3002 38 1 3.9896 -5.3729 -0.3658 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709964465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:33 Heat of formation + Delta-G solvation = -28.329241 kcal Electronic energy + Delta-G solvation = -16519.573325 eV Core-core repulsion = 14167.231722 eV Total energy + Delta-G solvation = -2352.341603 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89099 -36.18493 -33.08426 -31.05351 -30.20238 -28.09300 -26.88005 -24.71510 -22.46849 -21.16463 -20.24634 -18.90778 -18.03898 -16.48453 -15.74082 -14.86529 -14.48620 -14.11707 -13.68606 -13.21980 -12.78904 -12.68494 -12.35036 -12.05171 -11.80854 -11.07438 -10.97254 -10.72649 -10.66958 -10.60538 -10.41658 -10.26534 -10.13114 -10.01956 -9.76774 -9.58457 -9.38789 -8.85120 -8.55178 -8.24753 -7.56882 -5.92145 -3.97098 3.34261 3.39167 3.41590 4.47016 4.93874 5.17516 5.27306 5.30809 5.38031 5.79837 5.85842 5.92120 6.02147 6.06384 6.11060 6.17460 6.27757 6.33883 6.35634 6.38849 6.46491 6.65553 6.73825 6.76872 6.83468 6.86493 7.01818 7.15353 7.27041 7.34107 7.50929 7.76775 7.82539 8.12114 8.22989 8.25053 8.55940 9.06382 9.66332 11.13742 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.011183 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.165906 B = 2503.303614 C = 3293.638401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.063 3.937 10 H 0.037 0.963 11 C -0.113 4.113 12 C -0.118 4.118 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.103 3.897 16 H 0.019 0.981 17 C -0.075 4.075 18 C -0.105 4.105 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.123 4.123 22 H 0.259 0.741 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.323 0.677 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -9.159 -1.780 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.044 3.956 10 H 0.055 0.945 11 C -0.151 4.151 12 C -0.156 4.156 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.006 4.006 16 H 0.037 0.963 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.161 4.161 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.364 -8.787 -2.149 9.652 hybrid contribution 1.233 0.777 0.830 1.677 sum 4.597 -8.010 -1.319 9.329 Atomic orbital electron populations 1.69878 1.05780 1.26249 1.50924 1.24916 0.94767 0.98764 0.95377 0.86763 0.79667 0.83664 0.78496 1.20353 1.21421 1.20494 1.21142 0.92685 0.90680 1.50214 0.92892 1.18652 0.92224 0.90021 0.94662 0.94489 1.21677 1.00080 0.94744 0.98603 1.21668 0.97262 0.96703 0.99918 1.21830 0.95680 0.98359 0.90569 1.60393 1.28126 1.04515 1.38476 1.21657 0.94613 0.89838 0.94486 0.96328 1.21729 0.94875 0.97511 0.95307 1.22267 0.98721 0.99449 0.93846 1.22514 0.98708 0.97650 0.97516 1.22296 0.99236 0.97992 0.96073 1.22265 0.99121 0.97510 0.97233 0.93130 0.89183 0.95416 0.92251 0.93917 0.92703 0.96604 0.85976 0.90201 0.90033 0.92118 0.92532 0.92576 0.93056 0.91967 0.92879 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.35 55.43 0.63 -24.71 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.66 7.83 -34.44 -0.27 -13.93 16 8 H 0.05 1.41 6.78 -52.49 -0.36 1.05 16 9 C 0.06 1.55 1.60 -91.69 -0.15 1.40 16 10 H 0.04 1.01 7.26 -51.93 -0.38 0.63 16 11 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.07 1.15 6.55 -3.83 -0.03 1.13 16 14 N -0.68 -12.42 5.42 -106.76 -0.58 -13.00 16 15 C 0.10 2.12 1.55 -67.72 -0.11 2.02 16 16 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 17 C -0.08 -1.42 2.58 -89.50 -0.23 -1.65 16 18 C -0.11 -1.92 5.20 -25.07 -0.13 -2.05 16 19 C -0.13 -1.87 6.91 -24.74 -0.17 -2.04 16 20 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 21 C -0.12 -1.90 5.91 -25.62 -0.15 -2.05 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.32 5.19 6.97 -39.29 -0.27 4.91 16 30 H 0.08 1.66 6.67 -51.93 -0.35 1.32 16 31 H 0.08 1.58 6.96 -51.93 -0.36 1.22 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.78 6.48 -51.93 -0.34 0.44 16 LS Contribution 282.29 15.07 4.25 4.25 Total: -1.00 -27.21 282.29 -9.09 -36.30 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.58 Total: 3.56 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.79 Total: -22.68 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.05 Total: -37.70 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.21 -9.09 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds