Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48494 * 109.47344 * 239.99865 * 3 2 1 5 5 H 1.48506 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47428 * 119.99714 * 3 2 1 7 7 C 1.37876 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99784 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.50748 * 60.07602 * 9 7 2 11 11 C 1.53121 * 109.50411 * 299.99308 * 9 7 2 12 12 C 1.53118 * 109.15998 * 182.40705 * 11 9 7 13 13 C 1.53034 * 109.28068 * 57.65604 * 12 11 9 14 14 N 1.46848 * 109.52504 * 300.82023 * 13 12 11 15 15 C 1.46847 * 111.19556 * 61.74015 * 14 13 12 16 16 H 1.08999 * 109.46628 * 58.27319 * 15 14 13 17 17 C 1.53001 * 109.46201 * 178.24229 * 15 14 13 18 18 C 1.54272 * 110.03089 * 57.16470 * 17 15 14 19 19 C 1.54887 * 104.19673 * 217.10240 * 18 17 15 20 20 C 1.54894 * 102.74338 * 37.94443 * 19 18 17 21 21 C 1.53870 * 110.03270 * 300.00158 * 17 15 14 22 22 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.51709 * 62.50754 * 11 9 7 24 24 H 1.08992 * 109.57642 * 302.34233 * 11 9 7 25 25 H 1.09001 * 109.50624 * 297.71626 * 12 11 9 26 26 H 1.09002 * 109.53418 * 177.61821 * 12 11 9 27 27 H 1.09000 * 109.46341 * 180.80474 * 13 12 11 28 28 H 1.09003 * 109.45147 * 60.83100 * 13 12 11 29 29 H 1.00901 * 111.00066 * 185.83397 * 14 13 12 30 30 H 1.09004 * 110.01705 * 178.60722 * 17 15 14 31 31 H 1.08991 * 110.48681 * 335.79048 * 18 17 15 32 32 H 1.09007 * 110.48051 * 98.42847 * 18 17 15 33 33 H 1.08999 * 110.75974 * 279.63258 * 19 18 17 34 34 H 1.09004 * 110.91500 * 156.33093 * 19 18 17 35 35 H 1.09007 * 110.48361 * 203.37473 * 20 19 18 36 36 H 1.09003 * 110.59894 * 80.79652 * 20 19 18 37 37 H 1.09007 * 110.02966 * 238.56725 * 21 17 15 38 38 H 1.08994 * 110.03634 * 359.94589 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3701 -2.5808 1.2503 12 6 -0.3455 -3.9342 1.2731 13 6 0.6945 -5.0564 1.2417 14 7 1.5112 -4.9347 0.0273 15 6 2.2449 -3.6629 0.0061 16 1 2.8791 -3.5946 0.8899 17 6 3.1143 -3.5968 -1.2512 18 6 2.2374 -3.7642 -2.5094 19 6 3.1138 -4.6001 -3.4748 20 6 3.8193 -5.5956 -2.5206 21 6 4.1201 -4.7613 -1.2584 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3679 -1.7788 1.2287 24 1 0.9900 -2.4815 2.1412 25 1 -0.9961 -4.0166 0.4024 26 1 -0.9418 -4.0160 2.1819 27 1 0.1878 -6.0214 1.2434 28 1 1.3360 -4.9814 2.1198 29 1 2.1415 -5.7173 -0.0645 30 1 3.6445 -2.6451 -1.2886 31 1 1.3198 -4.2999 -2.2664 32 1 2.0084 -2.7924 -2.9468 33 1 3.8430 -3.9672 -3.9807 34 1 2.4967 -5.1312 -4.1996 35 1 4.7448 -5.9604 -2.9662 36 1 3.1592 -6.4286 -2.2790 37 1 5.1384 -4.3747 -1.3002 38 1 3.9896 -5.3729 -0.3658 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709964465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -43.636962 kcal Electronic energy + Delta-G solvation = -16520.237118 eV Core-core repulsion = 14167.231722 eV Total energy + Delta-G solvation = -2353.005396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44946 -37.65918 -35.06100 -32.61195 -32.06181 -29.39902 -28.43439 -26.65148 -24.12957 -22.87124 -21.55302 -20.43667 -19.72759 -18.40455 -17.35097 -16.42465 -16.29122 -15.53474 -15.27765 -14.75491 -14.49807 -14.32328 -13.99549 -13.71634 -13.30459 -12.88856 -12.76888 -12.62266 -12.29061 -11.99713 -11.84318 -11.75593 -11.69553 -11.48356 -11.34482 -11.22840 -11.17256 -10.68429 -10.41233 -10.31789 -9.10922 -8.04444 -6.16036 1.39681 1.40323 1.47605 2.43702 3.22270 3.46719 3.87988 4.01129 4.03619 4.31172 4.32853 4.47814 4.58801 4.69999 4.71054 4.83311 4.89670 4.94913 4.98930 5.01443 5.08820 5.13112 5.16885 5.27550 5.33719 5.40751 5.43267 5.55318 5.60858 5.66744 5.67838 5.79681 6.02912 6.18672 6.26708 6.54684 6.80542 6.96699 7.50468 8.99922 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.011183 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.165906 B = 2503.303614 C = 3293.638401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.049 0.951 9 C 0.065 3.935 10 H 0.001 0.999 11 C -0.111 4.111 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.681 5.681 15 C 0.114 3.886 16 H 0.005 0.995 17 C -0.077 4.077 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.117 4.117 22 H 0.258 0.742 23 H 0.055 0.945 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.020 0.980 29 H 0.342 0.658 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -11.151 -1.917 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.046 3.954 10 H 0.019 0.981 11 C -0.149 4.149 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.314 5.314 15 C 0.004 3.996 16 H 0.023 0.977 17 C -0.096 4.096 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.155 4.155 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.038 0.962 29 H 0.161 0.839 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.655 -10.799 -2.288 11.980 hybrid contribution 0.789 1.428 0.880 1.854 sum 5.444 -9.371 -1.408 10.928 Atomic orbital electron populations 1.70028 1.07046 1.26773 1.51845 1.25656 0.95558 1.01996 0.95308 0.85815 0.78530 0.79842 0.78694 1.19771 1.21140 1.19877 1.21482 0.92714 0.92144 1.49649 0.93283 1.18534 0.92545 0.91103 0.93235 0.98079 1.21536 0.99257 0.96361 0.97746 1.21586 0.97723 0.95170 1.00512 1.21860 0.95105 0.98860 0.90380 1.60281 1.28221 1.03924 1.38986 1.21350 0.93577 0.89737 0.94887 0.97723 1.21664 0.95407 0.97954 0.94600 1.22171 0.98957 0.98357 0.94662 1.22480 0.98378 0.97561 0.97314 1.22269 1.00461 0.97415 0.94535 1.22204 0.98207 0.96257 0.98820 0.93332 0.92630 0.96476 0.93329 0.91776 0.89098 0.96159 0.83866 0.93149 0.91241 0.95337 0.92130 0.90998 0.90529 0.90850 0.92052 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 11.35 21.45 0.24 -54.04 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.94 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -29.05 7.83 25.60 0.20 -28.85 16 8 H 0.05 2.70 6.78 -2.91 -0.02 2.68 16 9 C 0.06 3.29 1.60 -11.49 -0.02 3.27 16 10 H 0.00 0.06 7.26 -2.39 -0.02 0.04 16 11 C -0.11 -5.47 5.02 30.67 0.15 -5.32 16 12 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.22 6.55 86.32 0.57 2.78 16 14 N -0.68 -23.56 5.42 -491.67 -2.66 -26.23 16 15 C 0.11 4.71 1.55 44.94 0.07 4.78 16 16 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 17 C -0.08 -2.90 2.58 -10.07 -0.03 -2.92 16 18 C -0.10 -3.81 5.20 31.67 0.16 -3.64 16 19 C -0.12 -3.29 6.91 31.89 0.22 -3.07 16 20 C -0.11 -2.58 6.83 31.67 0.22 -2.37 16 21 C -0.12 -3.30 5.91 31.31 0.19 -3.11 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.06 3.11 6.15 -2.39 -0.01 3.10 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.34 9.87 6.97 -89.69 -0.62 9.24 16 30 H 0.05 2.16 6.67 -2.38 -0.02 2.14 16 31 H 0.07 2.70 6.96 -2.39 -0.02 2.68 16 32 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.64 6.48 -2.39 -0.02 1.62 16 Total: -1.00 -60.95 282.29 2.37 -58.58 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.39 Total: 16.48 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.37 Total: -41.48 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -2.42 Total: -80.27 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -60.95 2.37 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.945 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds