Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.53001 * 109.47256 * 120.00022 * 2 1 3 5 5 C 1.50697 * 109.46995 * 295.00320 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 4 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 4 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46501 * 109.47159 * 240.00608 * 2 1 3 14 14 C 1.35046 * 126.39355 * 299.68589 * 13 2 1 15 15 N 1.30498 * 108.69695 * 179.82777 * 14 13 2 16 16 C 1.34127 * 109.25986 * 0.44205 * 15 14 13 17 17 C 1.50692 * 125.99282 * 179.72624 * 16 15 14 18 18 C 1.53006 * 109.46949 * 305.00049 * 17 16 15 19 19 N 1.46902 * 109.46741 * 180.02562 * 18 17 16 20 20 C 1.34674 * 108.01353 * 359.72688 * 16 15 14 21 21 H 1.08996 * 109.47368 * 59.99901 * 1 2 3 22 22 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 24 24 H 1.08998 * 109.47065 * 174.99746 * 4 2 1 25 25 H 1.09001 * 109.46892 * 55.00010 * 4 2 1 26 26 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 27 27 H 1.08001 * 125.64981 * 359.97438 * 14 13 2 28 28 H 1.09002 * 109.47182 * 64.99993 * 17 16 15 29 29 H 1.09006 * 109.47166 * 185.00098 * 17 16 15 30 30 H 1.08993 * 109.47056 * 299.99677 * 18 17 16 31 31 H 1.08990 * 109.46844 * 60.00309 * 18 17 16 32 32 H 1.00900 * 111.00384 * 56.04564 * 19 18 17 33 33 H 1.00902 * 110.99846 * 180.02562 * 19 18 17 34 34 H 1.08002 * 126.58860 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0842 0.9766 2.3755 7 6 1.9924 -0.4024 3.7283 8 7 1.6491 0.2796 4.7992 9 14 2.9555 -1.9934 3.9031 10 1 4.4103 -1.6968 3.8766 11 1 2.6064 -2.6443 5.1914 12 1 2.6154 -2.9039 2.7804 13 7 2.0183 -0.6905 -1.1962 14 6 1.7779 -1.9758 -1.5338 15 7 2.3744 -2.2295 -2.6664 16 6 3.0186 -1.1294 -3.0832 17 6 3.8346 -1.0052 -4.3441 18 6 4.9098 -2.0935 -4.3650 19 7 5.7056 -1.9721 -5.5938 20 6 2.8084 -0.1552 -2.1774 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.1263 -0.7995 1.2055 25 1 1.6054 -1.7198 1.2951 26 1 1.8958 -0.0438 5.6798 27 1 1.1875 -2.6768 -0.9625 28 1 3.1838 -1.1206 -5.2108 29 1 4.3096 -0.0245 -4.3744 30 1 5.5605 -1.9780 -3.4983 31 1 4.4348 -3.0740 -4.3347 32 1 6.1041 -1.0488 -5.6768 33 1 6.4229 -2.6807 -5.6315 34 1 3.1902 0.8543 -2.2173 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709974519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = 21.890719 kcal Electronic energy + Delta-G solvation = -14962.451976 eV Core-core repulsion = 12508.747730 eV Total energy + Delta-G solvation = -2453.704246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.00643 -37.58572 -36.22679 -34.61350 -32.20467 -31.58988 -29.52074 -27.99559 -25.49826 -23.62248 -23.06705 -21.49815 -20.22922 -19.20900 -17.59591 -16.79602 -16.49387 -16.28077 -15.66006 -15.49324 -15.26714 -14.70057 -14.63524 -14.21671 -13.98515 -13.53924 -13.19915 -13.02199 -12.82424 -12.73415 -12.16577 -12.08941 -11.97447 -11.78923 -11.49052 -10.83013 -10.79722 -10.37832 -9.62144 -9.22095 -8.34115 -6.38582 1.21815 1.31099 1.34880 1.43417 1.98879 2.17752 2.29918 3.01324 3.58674 3.75593 3.87553 4.03374 4.14245 4.20300 4.34313 4.38785 4.46178 4.69560 4.76866 4.85343 4.90447 5.06143 5.14290 5.17085 5.24171 5.26382 5.50218 5.59623 5.90660 6.16059 6.22159 6.38087 6.64357 6.68470 7.20251 7.26299 8.81125 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.036572 B = 0.006168 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.418883 B = 4538.554318 C = 4947.672057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.147 3.853 3 H 0.096 0.904 4 C -0.010 4.010 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.251 1.251 13 N -0.445 5.445 14 C 0.173 3.827 15 N -0.520 5.520 16 C -0.023 4.023 17 C -0.020 4.020 18 C 0.077 3.923 19 N -0.854 5.854 20 C -0.059 4.059 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.028 0.972 26 H 0.267 0.733 27 H 0.210 0.790 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.017 0.983 31 H 0.058 0.942 32 H 0.349 0.651 33 H 0.349 0.651 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 -2.154 -15.296 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.048 4.048 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.581 5.581 9 Si 0.760 3.240 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.175 1.175 13 N -0.126 5.126 14 C -0.110 4.110 15 N -0.240 5.240 16 C -0.153 4.153 17 C -0.058 4.058 18 C -0.054 4.054 19 N -0.385 5.385 20 C -0.193 4.193 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.723 -2.965 -15.759 16.462 hybrid contribution 1.076 0.380 1.966 2.273 sum 4.799 -2.585 -13.793 14.831 Atomic orbital electron populations 1.21953 0.92339 1.03001 1.02519 1.21446 0.96181 0.96496 0.81413 0.88546 1.19788 0.96020 0.96619 0.92381 1.21147 1.35624 1.09079 0.90146 0.92907 1.25750 0.96486 1.00148 0.95633 1.70011 1.48266 1.41016 0.98825 0.85881 0.79228 0.80655 0.78225 1.19942 1.20866 1.17472 1.45971 1.36970 1.11227 1.18431 1.25081 1.04208 0.86233 0.95450 1.70110 1.13710 1.28846 1.11309 1.20927 1.04365 0.90285 0.99738 1.19725 0.94965 0.99466 0.91675 1.21509 0.94573 0.99212 0.90122 1.58693 1.31150 1.09853 1.38832 1.22934 1.02682 1.01943 0.91772 0.91673 0.91888 0.90879 0.97037 0.95367 0.92344 0.77329 0.90861 0.89149 0.96435 0.92339 0.83820 0.83756 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.06 71.98 0.65 -3.79 16 2 C 0.15 5.10 3.00 44.99 0.14 5.24 16 3 H 0.10 3.31 8.08 -2.39 -0.02 3.29 16 4 C -0.01 -0.43 3.51 29.85 0.10 -0.32 16 5 C -0.52 -27.18 8.96 25.60 0.23 -26.95 16 6 H 0.05 2.96 7.31 -2.92 -0.02 2.93 16 7 C 0.02 1.00 5.47 84.66 0.46 1.46 16 8 N -0.94 -55.77 13.96 21.45 0.30 -55.47 16 9 Si 0.94 42.54 27.47 68.60 1.88 44.43 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 13 N -0.45 -14.52 2.62 -506.55 -1.33 -15.84 16 14 C 0.17 5.70 11.65 180.26 2.10 7.80 16 15 N -0.52 -17.80 11.23 -188.32 -2.12 -19.92 16 16 C -0.02 -0.70 6.36 41.39 0.26 -0.44 16 17 C -0.02 -0.46 6.04 29.85 0.18 -0.28 16 18 C 0.08 1.78 6.75 86.30 0.58 2.37 16 19 N -0.85 -15.33 9.62 -186.72 -1.80 -17.13 16 20 C -0.06 -1.74 11.43 83.09 0.95 -0.79 16 21 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 23 H 0.07 2.57 6.96 -2.38 -0.02 2.56 16 24 H 0.01 0.50 7.58 -2.39 -0.02 0.49 16 25 H 0.03 1.19 7.12 -2.39 -0.02 1.18 16 26 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.21 6.06 8.06 -2.91 -0.02 6.03 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.68 8.11 -2.38 -0.02 1.66 16 30 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.35 4.91 8.99 -89.69 -0.81 4.10 16 33 H 0.35 5.19 9.08 -89.69 -0.81 4.38 16 34 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -62.73 286.05 2.02 -60.71 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.58 Total: 18.92 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.66 Total: -15.71 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -4.94 Total: -108.36 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.43 kcal Total: -62.73 2.02 -60.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.601 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds