Wall clock time and date at job start Mon Mar 30 2020 02:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99646 * 2 1 4 4 H 1.48503 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47054 * 299.99523 * 3 2 1 6 6 H 1.48502 * 109.47478 * 59.99951 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.46892 * 110.99830 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46956 * 180.02562 * 11 10 9 13 13 C 1.52947 * 109.41008 * 184.99886 * 12 11 10 14 14 C 1.53184 * 109.44835 * 176.90834 * 13 12 11 15 15 C 1.53146 * 108.88301 * 56.56851 * 14 13 12 16 16 C 1.52846 * 117.67745 * 91.48946 * 15 14 13 17 17 C 1.52805 * 117.74988 * 160.37048 * 15 14 13 18 18 C 1.53153 * 115.00626 * 306.05849 * 15 14 13 19 19 C 1.52934 * 109.41198 * 64.64041 * 12 11 10 20 20 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46929 * 59.99187 * 9 7 2 22 22 H 1.09004 * 109.46640 * 299.99689 * 9 7 2 23 23 H 1.00894 * 110.99629 * 303.95531 * 10 9 7 24 24 H 1.08997 * 109.47568 * 60.00072 * 11 10 9 25 25 H 1.09005 * 109.47212 * 299.99589 * 11 10 9 26 26 H 1.08999 * 109.35344 * 304.81441 * 12 11 10 27 27 H 1.08998 * 109.47963 * 296.89702 * 13 12 11 28 28 H 1.09002 * 109.47582 * 56.92060 * 13 12 11 29 29 H 1.08995 * 109.57119 * 176.39071 * 14 13 12 30 30 H 1.09004 * 109.56622 * 296.74630 * 14 13 12 31 31 H 1.08990 * 117.50691 * 215.22036 * 16 15 14 32 32 H 1.09003 * 117.50162 * 0.28495 * 16 15 14 33 33 H 1.09002 * 117.50024 * 359.85790 * 17 15 14 34 34 H 1.09007 * 117.49910 * 144.88817 * 17 15 14 35 35 H 1.08998 * 109.57351 * 294.11915 * 18 15 14 36 36 H 1.09004 * 109.56945 * 173.75509 * 18 15 14 37 37 H 1.08996 * 109.47798 * 303.08293 * 19 12 11 38 38 H 1.09004 * 109.47480 * 63.09767 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5056 -4.9070 0.0011 12 6 2.5306 -6.0429 0.0018 13 6 1.8041 -7.3831 -0.1233 14 6 2.8328 -8.5155 -0.2004 15 6 3.7361 -8.4496 1.0345 16 6 3.3232 -9.2639 2.2604 17 6 4.5175 -9.7072 1.4124 18 6 4.4073 -7.0940 1.2740 19 6 3.3297 -6.0058 1.3052 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8407 -3.5486 -0.7808 24 1 0.8804 -4.9818 -0.8886 25 1 0.8810 -4.9812 0.8914 26 1 3.2085 -5.9182 -0.8426 27 1 1.1642 -7.5322 0.7464 28 1 1.1950 -7.3833 -1.0272 29 1 2.3176 -9.4757 -0.2250 30 1 3.4362 -8.3999 -1.1008 31 1 3.5329 -8.8381 3.2415 32 1 2.4089 -9.8530 2.1888 33 1 4.3888 -10.5878 0.7830 34 1 5.5130 -9.5730 1.8358 35 1 5.1113 -6.8876 0.4679 36 1 4.9359 -7.1117 2.2272 37 1 3.8021 -5.0296 1.4142 38 1 2.6600 -6.1815 2.1472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709978979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:29 Heat of formation + Delta-G solvation = -8.439688 kcal Electronic energy + Delta-G solvation = -15259.160792 eV Core-core repulsion = 12907.681664 eV Total energy + Delta-G solvation = -2351.479127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42600 -36.26439 -33.95735 -32.13542 -30.76973 -28.69089 -26.06421 -23.23161 -22.71250 -22.38734 -21.21071 -20.17077 -18.54928 -16.37740 -15.36715 -15.28119 -14.59040 -14.44893 -14.08870 -13.68310 -13.34497 -13.01812 -12.48245 -12.34582 -12.09490 -11.74561 -11.57764 -11.41483 -11.18116 -10.93967 -10.86966 -10.65371 -10.51661 -10.24328 -9.98147 -9.86786 -9.75136 -9.46637 -9.08505 -8.45504 -7.21007 -6.00681 -4.02392 3.32501 3.39581 3.44876 3.73185 4.45169 4.58521 4.74021 4.83029 4.98391 5.07867 5.21644 5.35294 5.46724 5.50875 5.55899 5.58554 5.70211 5.73110 5.82031 5.94655 6.01202 6.05362 6.08123 6.15326 6.25232 6.28128 6.31650 6.43597 6.54977 6.79369 6.81878 7.30943 7.47187 7.82476 8.17059 8.45497 8.67314 9.07714 9.62575 11.10585 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.059495 B = 0.004684 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.515115 B = 5976.489254 C = 6220.866017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.063 3.937 12 C -0.081 4.081 13 C -0.111 4.111 14 C -0.079 4.079 15 C -0.116 4.116 16 C -0.176 4.176 17 C -0.183 4.183 18 C -0.082 4.082 19 C -0.102 4.102 20 H 0.260 0.740 21 H -0.015 1.015 22 H 0.027 0.973 23 H 0.326 0.674 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 -17.578 1.128 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.067 4.067 12 C -0.100 4.100 13 C -0.149 4.149 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.212 4.212 17 C -0.220 4.220 18 C -0.120 4.120 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.002 0.998 22 H 0.045 0.955 23 H 0.143 0.857 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.298 -17.434 1.823 18.626 hybrid contribution -0.059 0.843 -0.867 1.211 sum 6.239 -16.591 0.956 17.751 Atomic orbital electron populations 1.69978 1.06098 1.26614 1.51170 1.25000 0.94866 0.99376 0.95424 0.86438 0.80074 0.83392 0.77474 1.19651 1.21124 1.21016 1.21245 0.93542 0.90288 1.49974 0.91926 1.19550 0.90666 0.87523 0.95656 1.60634 1.21145 1.01334 1.48697 1.21929 0.95086 0.90241 0.99464 1.21103 0.97052 0.93506 0.98319 1.21547 0.97458 0.94298 1.01608 1.21121 0.96286 0.98331 0.95871 1.21543 1.01105 0.92545 0.96362 1.22985 0.98691 1.03887 0.95686 1.22981 0.96360 0.98501 1.04116 1.21202 0.97560 0.92200 1.01000 1.21445 0.96851 0.98664 0.96974 0.93014 0.99767 0.95528 0.85745 0.96677 0.92015 0.91821 0.91995 0.92246 0.92356 0.91731 0.89024 0.89196 0.89252 0.89124 0.91808 0.92322 0.90084 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16 10 N -0.69 -14.93 5.87 -115.06 -0.68 -15.61 16 11 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 12 C -0.08 -1.17 2.24 -90.68 -0.20 -1.37 16 13 C -0.11 -1.37 5.21 -26.66 -0.14 -1.51 16 14 C -0.08 -0.85 5.67 -26.56 -0.15 -1.00 16 15 C -0.12 -1.26 1.97 -154.53 -0.31 -1.57 16 16 C -0.18 -1.77 9.93 -26.79 -0.27 -2.04 16 17 C -0.18 -1.74 9.99 -26.81 -0.27 -2.01 16 18 C -0.08 -0.98 5.67 -26.56 -0.15 -1.13 16 19 C -0.10 -1.45 5.13 -26.67 -0.14 -1.58 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.33 6.79 8.72 -39.29 -0.34 6.45 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.08 1.31 7.65 -51.93 -0.40 0.92 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -29.62 303.79 -9.51 -39.13 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.04 Total: 1.07 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.08 Total: -19.53 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.06 Total: -42.15 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.62 -9.51 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds