Wall clock time and date at job start Mon Mar 30 2020 02:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99646 * 2 1 4 4 H 1.48503 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47054 * 299.99523 * 3 2 1 6 6 H 1.48502 * 109.47478 * 59.99951 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.46892 * 110.99830 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46956 * 180.02562 * 11 10 9 13 13 C 1.52947 * 109.41008 * 184.99886 * 12 11 10 14 14 C 1.53184 * 109.44835 * 176.90834 * 13 12 11 15 15 C 1.53146 * 108.88301 * 56.56851 * 14 13 12 16 16 C 1.52846 * 117.67745 * 91.48946 * 15 14 13 17 17 C 1.52805 * 117.74988 * 160.37048 * 15 14 13 18 18 C 1.53153 * 115.00626 * 306.05849 * 15 14 13 19 19 C 1.52934 * 109.41198 * 64.64041 * 12 11 10 20 20 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46929 * 59.99187 * 9 7 2 22 22 H 1.09004 * 109.46640 * 299.99689 * 9 7 2 23 23 H 1.00894 * 110.99629 * 303.95531 * 10 9 7 24 24 H 1.08997 * 109.47568 * 60.00072 * 11 10 9 25 25 H 1.09005 * 109.47212 * 299.99589 * 11 10 9 26 26 H 1.08999 * 109.35344 * 304.81441 * 12 11 10 27 27 H 1.08998 * 109.47963 * 296.89702 * 13 12 11 28 28 H 1.09002 * 109.47582 * 56.92060 * 13 12 11 29 29 H 1.08995 * 109.57119 * 176.39071 * 14 13 12 30 30 H 1.09004 * 109.56622 * 296.74630 * 14 13 12 31 31 H 1.08990 * 117.50691 * 215.22036 * 16 15 14 32 32 H 1.09003 * 117.50162 * 0.28495 * 16 15 14 33 33 H 1.09002 * 117.50024 * 359.85790 * 17 15 14 34 34 H 1.09007 * 117.49910 * 144.88817 * 17 15 14 35 35 H 1.08998 * 109.57351 * 294.11915 * 18 15 14 36 36 H 1.09004 * 109.56945 * 173.75509 * 18 15 14 37 37 H 1.08996 * 109.47798 * 303.08293 * 19 12 11 38 38 H 1.09004 * 109.47480 * 63.09767 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5056 -4.9070 0.0011 12 6 2.5306 -6.0429 0.0018 13 6 1.8041 -7.3831 -0.1233 14 6 2.8328 -8.5155 -0.2004 15 6 3.7361 -8.4496 1.0345 16 6 3.3232 -9.2639 2.2604 17 6 4.5175 -9.7072 1.4124 18 6 4.4073 -7.0940 1.2740 19 6 3.3297 -6.0058 1.3052 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8407 -3.5486 -0.7808 24 1 0.8804 -4.9818 -0.8886 25 1 0.8810 -4.9812 0.8914 26 1 3.2085 -5.9182 -0.8426 27 1 1.1642 -7.5322 0.7464 28 1 1.1950 -7.3833 -1.0272 29 1 2.3176 -9.4757 -0.2250 30 1 3.4362 -8.3999 -1.1008 31 1 3.5329 -8.8381 3.2415 32 1 2.4089 -9.8530 2.1888 33 1 4.3888 -10.5878 0.7830 34 1 5.5130 -9.5730 1.8358 35 1 5.1113 -6.8876 0.4679 36 1 4.9359 -7.1117 2.2272 37 1 3.8021 -5.0296 1.4142 38 1 2.6600 -6.1815 2.1472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:29 Heat of formation + Delta-G solvation = -25.315145 kcal Electronic energy + Delta-G solvation = -15259.892566 eV Core-core repulsion = 12907.681664 eV Total energy + Delta-G solvation = -2352.210902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39139 -37.67051 -35.61591 -34.07740 -31.76999 -30.19967 -27.83936 -24.75212 -23.83932 -23.26017 -22.99289 -21.35891 -19.49751 -18.55141 -16.81320 -16.34853 -16.15807 -15.90580 -15.45455 -15.13985 -14.41917 -14.33401 -14.15813 -13.76583 -13.32749 -13.07837 -13.03991 -12.75077 -12.61763 -12.45679 -12.26171 -12.11953 -11.87126 -11.74233 -11.44145 -11.24934 -10.91880 -10.71141 -10.66757 -10.34300 -9.08423 -8.23224 -6.34741 1.40933 1.41891 1.56003 2.39922 2.93670 3.10053 3.55694 3.77091 3.85837 3.91199 4.07922 4.16518 4.34040 4.42824 4.50616 4.62487 4.68904 4.71624 4.82399 4.84964 5.01909 5.02771 5.08655 5.09649 5.16388 5.21801 5.26899 5.29218 5.30069 5.34664 5.45864 5.59926 5.63727 5.67016 6.01916 6.45547 6.73440 6.89846 7.36617 8.88871 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.059495 B = 0.004684 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.515115 B = 5976.489254 C = 6220.866017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.064 3.936 12 C -0.071 4.071 13 C -0.107 4.107 14 C -0.074 4.074 15 C -0.131 4.131 16 C -0.179 4.179 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.098 4.098 20 H 0.265 0.735 21 H -0.042 1.042 22 H -0.003 1.003 23 H 0.334 0.666 24 H 0.013 0.987 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -18.457 0.935 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.314 5.314 11 C -0.066 4.066 12 C -0.090 4.090 13 C -0.145 4.145 14 C -0.111 4.111 15 C -0.131 4.131 16 C -0.216 4.216 17 C -0.206 4.206 18 C -0.114 4.114 19 C -0.136 4.136 20 H 0.074 0.926 21 H -0.024 1.024 22 H 0.015 0.985 23 H 0.151 0.849 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.740 -18.340 1.627 19.973 hybrid contribution -0.543 1.077 -0.789 1.441 sum 7.198 -17.263 0.838 18.722 Atomic orbital electron populations 1.70106 1.07903 1.27969 1.51665 1.25993 0.95798 1.03520 0.94540 0.85246 0.78931 0.78099 0.77770 1.18556 1.20216 1.20376 1.21585 0.93841 0.91377 1.50444 0.91643 1.19211 0.90728 0.89227 0.92941 1.60514 1.20308 1.01498 1.49043 1.22018 0.95994 0.89823 0.98754 1.21021 0.96144 0.93175 0.98625 1.21501 0.97798 0.93474 1.01722 1.21089 0.95832 0.98130 0.96035 1.21515 1.02111 0.92474 0.96955 1.23049 0.99453 1.03728 0.95327 1.23043 0.96350 0.97779 1.03387 1.21116 0.96736 0.92056 1.01447 1.21360 0.97292 0.98469 0.96458 0.92607 1.02415 0.98526 0.84950 0.96892 0.93139 0.91462 0.92293 0.91792 0.90789 0.91311 0.89227 0.88553 0.88001 0.88549 0.91604 0.91764 0.92504 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.53 -31.22 9.32 25.60 0.24 -30.98 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.51 5.44 85.56 0.47 11.97 16 10 N -0.68 -30.37 5.87 -517.93 -3.04 -33.41 16 11 C 0.06 2.35 5.07 86.31 0.44 2.79 16 12 C -0.07 -2.01 2.24 -10.83 -0.02 -2.03 16 13 C -0.11 -2.49 5.21 30.64 0.16 -2.33 16 14 C -0.07 -1.41 5.67 30.70 0.17 -1.23 16 15 C -0.13 -2.55 1.97 -52.20 -0.10 -2.65 16 16 C -0.18 -3.20 9.93 30.55 0.30 -2.89 16 17 C -0.17 -2.72 9.99 30.54 0.31 -2.41 16 18 C -0.08 -1.71 5.67 30.71 0.17 -1.54 16 19 C -0.10 -2.76 5.13 30.63 0.16 -2.61 16 20 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 21 H -0.04 -2.50 8.14 -2.39 -0.02 -2.51 16 22 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.33 14.03 8.72 -89.70 -0.78 13.25 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 25 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.36 8.09 -2.38 -0.02 1.34 16 37 H 0.06 1.86 7.65 -2.39 -0.02 1.84 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -63.58 303.79 2.24 -61.34 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.22 Total: 16.04 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 2.75 Total: -33.48 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -2.76 Total: -90.81 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -63.58 2.24 -61.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.025 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds