Wall clock time and date at job start Mon Mar 30 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46737 * 2 1 4 4 C 1.53000 * 109.47111 * 240.00229 * 2 1 3 5 5 C 1.50699 * 109.46768 * 175.00053 * 4 2 1 6 6 H 1.07999 * 120.00397 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99692 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47241 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47114 * 120.00585 * 9 7 5 12 12 H 1.48502 * 109.47145 * 240.00051 * 9 7 5 13 13 N 1.46898 * 109.46986 * 119.99764 * 2 1 3 14 14 C 1.46893 * 111.00440 * 275.00371 * 13 2 1 15 15 C 1.50699 * 109.47357 * 179.97438 * 14 13 2 16 16 C 1.39875 * 126.03728 * 89.97354 * 15 14 13 17 17 N 1.30839 * 108.20184 * 180.02562 * 16 15 14 18 18 N 1.40085 * 108.20364 * 0.02562 * 17 16 15 19 19 C 1.46506 * 126.03688 * 180.02562 * 18 17 16 20 20 C 1.34949 * 107.93019 * 359.97438 * 18 17 16 21 21 H 1.09004 * 109.46774 * 299.99934 * 1 2 3 22 22 H 1.09004 * 109.46693 * 60.00012 * 1 2 3 23 23 H 1.08993 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46718 * 295.00132 * 4 2 1 25 25 H 1.08999 * 109.47123 * 55.00148 * 4 2 1 26 26 H 0.97006 * 119.99910 * 179.97438 * 8 7 5 27 27 H 1.00893 * 110.99657 * 151.04556 * 13 2 1 28 28 H 1.08999 * 109.47312 * 59.99876 * 14 13 2 29 29 H 1.09001 * 109.46881 * 299.99724 * 14 13 2 30 30 H 1.08003 * 125.89835 * 359.76152 * 16 15 14 31 31 H 1.09006 * 109.46733 * 269.99752 * 19 18 17 32 32 H 1.08996 * 109.47043 * 29.99734 * 19 18 17 33 33 H 1.09000 * 109.46815 * 150.00063 * 19 18 17 34 34 H 1.07998 * 126.13002 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0791 -0.0861 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 3.5766 -1.8376 -3.2995 9 14 6.0921 -1.0610 -2.4367 10 1 6.5837 -0.2907 -1.2662 11 1 6.6864 -2.4218 -2.4183 12 1 6.4863 -0.3657 -3.6884 13 7 2.0197 -0.6924 1.1995 14 6 2.0824 0.2225 2.3469 15 6 2.5873 -0.5219 3.5560 16 6 3.9255 -0.6560 3.9404 17 7 3.9663 -1.3682 5.0372 18 7 2.6534 -1.7108 5.3856 19 6 2.2497 -2.5047 6.5488 20 6 1.8262 -1.1794 4.4613 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 -0.0005 24 1 1.7517 -1.7715 -1.2056 25 1 1.6055 -0.2616 -2.1370 26 1 4.0610 -2.2444 -4.0349 27 1 2.9173 -1.1204 1.0287 28 1 1.0871 0.6163 2.5525 29 1 2.7589 1.0461 2.1183 30 1 4.7781 -0.2463 3.4192 31 1 2.2250 -3.5602 6.2774 32 1 2.9648 -2.3541 7.3574 33 1 1.2588 -2.1906 6.8768 34 1 0.7496 -1.2644 4.4462 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709991765.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:18 Heat of formation + Delta-G solvation = 44.786044 kcal Electronic energy + Delta-G solvation = -14927.530413 eV Core-core repulsion = 12474.818983 eV Total energy + Delta-G solvation = -2452.711430 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.03896 -38.16459 -35.04199 -34.14659 -32.70713 -30.32229 -29.23168 -27.77591 -25.47866 -24.45081 -21.93970 -21.13416 -20.95134 -18.48304 -17.66909 -16.71103 -16.44280 -16.16916 -15.68709 -15.35366 -14.82763 -14.17970 -14.05526 -13.59479 -13.47190 -13.38256 -13.12980 -13.11477 -13.00001 -12.58071 -12.39125 -12.29150 -12.04096 -11.40657 -11.19331 -10.96235 -10.55993 -10.30083 -9.36296 -9.01468 -8.17363 -6.26904 1.00318 1.39612 1.41044 1.52760 1.75871 1.84478 2.41829 3.15518 3.68629 3.76212 4.07734 4.34729 4.38256 4.45149 4.48064 4.59114 4.71637 4.71983 4.80780 4.85853 4.96224 5.10850 5.28085 5.31776 5.39961 5.55422 5.60441 5.70879 5.88401 6.21731 6.24775 6.53929 6.70991 6.77303 6.88878 7.41663 8.94543 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.006748 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.631541 B = 4148.126840 C = 4879.187666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 H 0.026 0.974 4 C 0.026 3.974 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.681 5.681 14 C 0.142 3.858 15 C -0.248 4.248 16 C 0.040 3.960 17 N -0.336 5.336 18 N -0.382 5.382 19 C 0.094 3.906 20 C 0.079 3.921 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.048 0.952 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.262 0.738 27 H 0.339 0.661 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.183 0.817 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 1.923 17.678 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.044 0.956 4 C -0.011 4.011 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.313 5.313 14 C 0.012 3.988 15 C -0.259 4.259 16 C -0.146 4.146 17 N -0.158 5.158 18 N -0.164 5.164 19 C -0.046 4.046 20 C -0.069 4.069 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.200 0.800 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.947 0.973 18.742 19.408 hybrid contribution 1.347 0.676 -1.501 2.127 sum -3.600 1.649 17.241 17.689 Atomic orbital electron populations 1.21703 0.94302 1.01361 1.01048 1.21446 0.95266 0.94826 0.90049 0.95646 1.19156 0.94787 0.94684 0.92501 1.21569 0.93375 1.33743 1.08098 0.92436 1.25871 1.03178 0.94927 0.95447 1.70101 1.37371 1.36941 1.12780 0.85500 0.80078 0.77838 0.78243 1.18633 1.20761 1.20591 1.60701 1.33814 1.32628 1.04187 1.20126 0.99938 0.91866 0.86848 1.20132 0.92766 1.11422 1.01623 1.24017 0.98417 0.97817 0.94320 1.77231 1.00108 1.20596 1.17889 1.48820 1.03642 1.41626 1.22358 1.22186 1.02998 0.94931 0.84464 1.22751 0.98672 0.95641 0.89847 0.91525 0.93090 0.93334 0.98648 0.98667 0.92927 0.84258 0.89661 0.95782 0.80031 0.90085 0.89104 0.86390 0.77861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.42 71.99 0.68 -3.64 16 2 C 0.09 3.87 2.59 44.92 0.12 3.99 16 3 H 0.03 1.07 7.80 -2.39 -0.02 1.05 16 4 C 0.03 1.37 4.57 29.85 0.14 1.51 16 5 C -0.53 -29.66 8.12 25.60 0.21 -29.45 16 6 H 0.06 3.10 7.49 -2.91 -0.02 3.08 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.68 -26.04 6.30 -495.58 -3.12 -29.16 16 14 C 0.14 4.38 5.96 85.56 0.51 4.89 16 15 C -0.25 -7.26 5.61 -20.14 -0.11 -7.38 16 16 C 0.04 1.23 11.96 85.24 1.02 2.25 16 17 N -0.34 -10.41 12.58 -57.02 -0.72 -11.13 16 18 N -0.38 -9.29 4.01 -369.55 -1.48 -10.78 16 19 C 0.09 1.27 11.47 127.77 1.47 2.74 16 20 C 0.08 1.89 11.40 83.54 0.95 2.85 16 21 H 0.07 1.88 7.45 -2.38 -0.02 1.86 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.00 -0.29 8.14 -2.39 -0.02 -0.30 16 26 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 27 H 0.34 14.76 7.20 -89.70 -0.65 14.12 16 28 H 0.09 2.29 7.44 -2.39 -0.02 2.27 16 29 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 30 H 0.18 5.22 8.06 -2.91 -0.02 5.19 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -69.13 290.45 2.85 -66.28 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.43 Total: 16.31 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 5.44 Total: -21.58 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.04 Total: -107.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.13 2.85 -66.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991765.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.065 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds