Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47204 * 2 1 4 4 N 1.46904 * 109.46850 * 120.00082 * 2 1 3 5 5 C 1.46906 * 110.99980 * 274.99013 * 4 2 1 6 6 H 1.09004 * 109.46482 * 31.88371 * 5 4 2 7 7 C 1.52998 * 109.47279 * 151.88548 * 5 4 2 8 8 C 1.50701 * 109.47160 * 271.88908 * 5 4 2 9 9 H 1.07996 * 120.00455 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99629 * 179.72298 * 8 5 4 11 11 N 1.31520 * 120.00330 * 0.27274 * 10 8 5 12 12 Si 1.86799 * 119.99978 * 180.27243 * 10 8 5 13 13 H 1.48504 * 109.47163 * 90.00022 * 12 10 8 14 14 H 1.48496 * 109.47402 * 210.00163 * 12 10 8 15 15 H 1.48502 * 109.46894 * 330.00161 * 12 10 8 16 16 C 1.50702 * 109.47290 * 239.99564 * 2 1 3 17 17 C 1.34665 * 125.98873 * 84.99870 * 16 2 1 18 18 N 1.36880 * 106.81792 * 179.97438 * 17 16 2 19 19 C 1.46505 * 126.39501 * 180.02562 * 18 17 16 20 20 C 1.35037 * 107.20374 * 0.02562 * 18 17 16 21 21 N 1.30491 * 108.70202 * 359.76281 * 20 18 17 22 22 H 1.09000 * 109.47533 * 176.30931 * 1 2 3 23 23 H 1.09007 * 109.47265 * 296.30285 * 1 2 3 24 24 H 1.08998 * 109.47259 * 56.30172 * 1 2 3 25 25 H 1.00901 * 111.00316 * 151.04481 * 4 2 1 26 26 H 1.08999 * 109.47269 * 62.12299 * 7 5 4 27 27 H 1.08999 * 109.47157 * 182.12781 * 7 5 4 28 28 H 1.09002 * 109.46978 * 302.12897 * 7 5 4 29 29 H 0.96990 * 120.00429 * 180.02562 * 11 10 8 30 30 H 1.08005 * 126.59001 * 359.97438 * 17 16 2 31 31 H 1.08995 * 109.47374 * 90.00176 * 19 18 17 32 32 H 1.09003 * 109.46503 * 210.00136 * 19 18 17 33 33 H 1.09001 * 109.47063 * 329.99426 * 19 18 17 34 34 H 1.08007 * 125.64392 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 1 1.2911 0.9672 2.2615 7 6 1.8992 -0.5704 3.6424 8 6 3.4219 0.9131 2.3658 9 1 4.1534 0.6938 1.6022 10 6 3.7115 1.8288 3.3552 11 7 2.8209 2.0956 4.2854 12 14 5.3688 2.6904 3.3743 13 1 5.2839 3.9445 2.5834 14 1 5.7430 3.0127 4.7747 15 1 6.3970 1.7989 2.7798 16 6 2.0323 -0.7105 -1.2304 17 6 2.2066 -0.1594 -2.4467 18 7 2.6751 -1.1501 -3.2669 19 6 3.0105 -1.0169 -4.6868 20 6 2.7703 -2.2729 -2.5229 21 7 2.3888 -2.0014 -1.3049 22 1 -0.3634 -1.0255 -0.0661 23 1 -0.3634 0.4554 0.9213 24 1 -0.3633 0.5701 -0.8550 25 1 2.9172 -1.1206 1.0288 26 1 2.7118 -1.2894 3.7464 27 1 1.9082 0.1133 4.4913 28 1 0.9470 -1.1001 3.6125 29 1 3.0244 2.7400 4.9812 30 1 2.0137 0.8670 -2.7221 31 1 4.0587 -0.7356 -4.7878 32 1 2.8393 -1.9680 -5.1912 33 1 2.3829 -0.2484 -5.1379 34 1 3.1104 -3.2352 -2.8763 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710173185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = 60.986706 kcal Electronic energy + Delta-G solvation = -15297.440922 eV Core-core repulsion = 12845.432005 eV Total energy + Delta-G solvation = -2452.008917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76756 -36.32507 -33.92811 -32.64075 -30.55801 -28.62950 -26.94850 -26.64964 -24.91615 -22.36889 -21.00551 -19.71636 -19.08787 -16.97849 -16.29522 -15.54212 -14.78902 -14.38762 -14.25466 -13.52419 -13.41741 -13.07370 -12.80794 -12.61808 -12.17226 -11.64602 -11.44546 -11.09582 -10.87273 -10.73646 -10.51663 -10.13975 -9.91183 -9.83440 -9.43074 -9.26495 -8.91961 -8.30258 -8.03981 -7.02241 -5.89346 -4.01093 2.28939 2.95077 3.31959 3.38928 3.42954 3.52162 4.47599 4.60745 4.85759 4.96516 5.06731 5.19582 5.35040 5.49464 5.56852 6.01202 6.17858 6.28060 6.42727 6.54385 6.73119 6.95432 7.05931 7.08345 7.32941 7.43179 7.48987 7.68063 7.87305 8.24020 8.34835 8.40777 8.56433 8.90425 9.16464 9.66094 11.11297 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.007330 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.372131 B = 3818.838762 C = 4313.925885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.169 3.831 3 H 0.054 0.946 4 N -0.676 5.676 5 C 0.205 3.795 6 H 0.031 0.969 7 C -0.122 4.122 8 C -0.539 4.539 9 H 0.052 0.948 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.887 3.113 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.023 3.977 17 C -0.066 4.066 18 N -0.470 5.470 19 C 0.077 3.923 20 C 0.167 3.833 21 N -0.468 5.468 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.337 0.663 26 H 0.023 0.977 27 H 0.077 0.923 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.170 0.830 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -4.247 -16.168 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.057 3.943 3 H 0.072 0.928 4 N -0.307 5.307 5 C 0.097 3.903 6 H 0.049 0.951 7 C -0.180 4.180 8 C -0.579 4.579 9 H 0.070 0.930 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.106 4.106 17 C -0.198 4.198 18 N -0.155 5.155 19 C -0.066 4.066 20 C -0.114 4.114 21 N -0.186 5.186 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.154 0.846 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.187 0.813 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.665 -4.925 -15.321 16.179 hybrid contribution 1.903 1.674 -1.021 2.732 sum 0.238 -3.250 -16.342 16.664 Atomic orbital electron populations 1.21730 0.95103 1.01233 1.00511 1.19677 0.94356 0.94632 0.85645 0.92792 1.60851 1.33272 1.33214 1.03339 1.19205 0.95282 0.89202 0.86603 0.95063 1.21646 0.96580 0.98878 1.00903 1.21903 1.01289 1.23397 1.11280 0.93016 1.24929 0.96583 0.96591 0.95479 1.69896 1.34108 1.34124 1.14491 0.86682 0.84780 0.79867 0.77160 1.20873 1.21186 1.20086 1.21052 1.03745 0.90825 0.94994 1.22404 1.10275 0.95158 0.91969 1.45362 1.49933 1.10128 1.10061 1.21945 1.01955 1.03888 0.78853 1.25016 1.06346 0.92419 0.87658 1.70215 1.15723 1.15331 1.17303 0.92799 0.92209 0.94046 0.84570 0.95731 0.90396 0.96815 0.93034 0.81288 0.90920 0.89815 0.90019 0.78360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.39 37.15 0.35 -2.01 16 2 C 0.17 3.49 2.88 -68.86 -0.20 3.29 16 3 H 0.05 1.20 7.75 -51.93 -0.40 0.80 16 4 N -0.68 -15.97 5.97 -102.17 -0.61 -16.58 16 5 C 0.21 5.43 2.36 -68.86 -0.16 5.27 16 6 H 0.03 0.89 7.11 -51.93 -0.37 0.52 16 7 C -0.12 -3.18 9.27 37.16 0.34 -2.84 16 8 C -0.54 -15.30 8.41 -34.44 -0.29 -15.59 16 9 H 0.05 1.48 7.69 -52.49 -0.40 1.08 16 10 C 0.07 1.88 5.31 -17.82 -0.09 1.78 16 11 N -0.89 -25.90 11.35 55.43 0.63 -25.27 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 C 0.02 0.44 5.81 -82.85 -0.48 -0.04 16 17 C -0.07 -1.00 11.49 -16.56 -0.19 -1.19 16 18 N -0.47 -5.86 3.15 -125.99 -0.40 -6.26 16 19 C 0.08 0.54 11.18 59.85 0.67 1.21 16 20 C 0.17 2.35 12.56 -90.39 -1.14 1.22 16 21 N -0.47 -8.70 10.74 -10.88 -0.12 -8.81 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 1.16 7.43 -51.93 -0.39 0.77 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.34 8.31 7.67 -39.29 -0.30 8.01 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 2.17 6.14 -51.93 -0.32 1.85 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.20 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -32.49 285.94 -7.52 -40.01 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.12 Total: 4.70 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.19 Total: -8.91 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.49 Total: -56.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.49 -7.52 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710173185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.994 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds