Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47204 * 2 1 4 4 N 1.46904 * 109.46850 * 120.00082 * 2 1 3 5 5 C 1.46906 * 110.99980 * 274.99013 * 4 2 1 6 6 H 1.09004 * 109.46482 * 31.88371 * 5 4 2 7 7 C 1.52998 * 109.47279 * 151.88548 * 5 4 2 8 8 C 1.50701 * 109.47160 * 271.88908 * 5 4 2 9 9 H 1.07996 * 120.00455 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99629 * 179.72298 * 8 5 4 11 11 N 1.31520 * 120.00330 * 0.27274 * 10 8 5 12 12 Si 1.86799 * 119.99978 * 180.27243 * 10 8 5 13 13 H 1.48504 * 109.47163 * 90.00022 * 12 10 8 14 14 H 1.48496 * 109.47402 * 210.00163 * 12 10 8 15 15 H 1.48502 * 109.46894 * 330.00161 * 12 10 8 16 16 C 1.50702 * 109.47290 * 239.99564 * 2 1 3 17 17 C 1.34665 * 125.98873 * 84.99870 * 16 2 1 18 18 N 1.36880 * 106.81792 * 179.97438 * 17 16 2 19 19 C 1.46505 * 126.39501 * 180.02562 * 18 17 16 20 20 C 1.35037 * 107.20374 * 0.02562 * 18 17 16 21 21 N 1.30491 * 108.70202 * 359.76281 * 20 18 17 22 22 H 1.09000 * 109.47533 * 176.30931 * 1 2 3 23 23 H 1.09007 * 109.47265 * 296.30285 * 1 2 3 24 24 H 1.08998 * 109.47259 * 56.30172 * 1 2 3 25 25 H 1.00901 * 111.00316 * 151.04481 * 4 2 1 26 26 H 1.08999 * 109.47269 * 62.12299 * 7 5 4 27 27 H 1.08999 * 109.47157 * 182.12781 * 7 5 4 28 28 H 1.09002 * 109.46978 * 302.12897 * 7 5 4 29 29 H 0.96990 * 120.00429 * 180.02562 * 11 10 8 30 30 H 1.08005 * 126.59001 * 359.97438 * 17 16 2 31 31 H 1.08995 * 109.47374 * 90.00176 * 19 18 17 32 32 H 1.09003 * 109.46503 * 210.00136 * 19 18 17 33 33 H 1.09001 * 109.47063 * 329.99426 * 19 18 17 34 34 H 1.08007 * 125.64392 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 1 1.2911 0.9672 2.2615 7 6 1.8992 -0.5704 3.6424 8 6 3.4219 0.9131 2.3658 9 1 4.1534 0.6938 1.6022 10 6 3.7115 1.8288 3.3552 11 7 2.8209 2.0956 4.2854 12 14 5.3688 2.6904 3.3743 13 1 5.2839 3.9445 2.5834 14 1 5.7430 3.0127 4.7747 15 1 6.3970 1.7989 2.7798 16 6 2.0323 -0.7105 -1.2304 17 6 2.2066 -0.1594 -2.4467 18 7 2.6751 -1.1501 -3.2669 19 6 3.0105 -1.0169 -4.6868 20 6 2.7703 -2.2729 -2.5229 21 7 2.3888 -2.0014 -1.3049 22 1 -0.3634 -1.0255 -0.0661 23 1 -0.3634 0.4554 0.9213 24 1 -0.3633 0.5701 -0.8550 25 1 2.9172 -1.1206 1.0288 26 1 2.7118 -1.2894 3.7464 27 1 1.9082 0.1133 4.4913 28 1 0.9470 -1.1001 3.6125 29 1 3.0244 2.7400 4.9812 30 1 2.0137 0.8670 -2.7221 31 1 4.0587 -0.7356 -4.7878 32 1 2.8393 -1.9680 -5.1912 33 1 2.3829 -0.2484 -5.1379 34 1 3.1104 -3.2352 -2.8763 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710173185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = 39.863263 kcal Electronic energy + Delta-G solvation = -15298.356903 eV Core-core repulsion = 12845.432005 eV Total energy + Delta-G solvation = -2452.924898 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.88541 -38.11940 -35.40803 -34.22800 -32.39985 -29.90400 -28.71957 -27.55861 -27.13064 -23.83463 -22.23845 -21.51827 -20.49901 -18.69090 -17.79127 -16.77225 -16.49882 -16.08127 -15.57574 -14.99762 -14.67428 -14.49476 -14.23988 -13.67913 -13.45062 -13.33972 -13.22249 -12.92316 -12.82906 -12.64517 -12.27575 -12.08172 -11.93112 -11.72493 -11.08235 -10.71111 -10.49695 -10.35610 -9.24763 -8.96105 -8.04854 -6.26901 1.19977 1.37081 1.38674 1.48919 2.06993 2.28675 2.40625 3.14812 3.63363 3.79496 4.09563 4.16763 4.32458 4.50463 4.57972 4.68721 4.75950 4.82220 4.88382 5.02508 5.12675 5.20132 5.28676 5.37275 5.45525 5.52265 5.69895 5.82634 6.07473 6.21011 6.43660 6.48452 6.85499 7.05347 7.33692 7.44534 8.92884 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.007330 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.372131 B = 3818.838762 C = 4313.925885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.168 3.832 3 H 0.031 0.969 4 N -0.672 5.672 5 C 0.211 3.789 6 H 0.006 0.994 7 C -0.111 4.111 8 C -0.556 4.556 9 H 0.043 0.957 10 C 0.020 3.980 11 N -0.912 5.912 12 Si 0.953 3.047 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.274 1.274 16 C -0.018 4.018 17 C -0.055 4.055 18 N -0.462 5.462 19 C 0.069 3.931 20 C 0.175 3.825 21 N -0.521 5.521 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.328 0.672 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.191 0.809 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -4.333 -18.501 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.057 3.943 3 H 0.049 0.951 4 N -0.302 5.302 5 C 0.102 3.898 6 H 0.024 0.976 7 C -0.170 4.170 8 C -0.595 4.595 9 H 0.061 0.939 10 C -0.180 4.180 11 N -0.551 5.551 12 Si 0.779 3.221 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.199 1.199 16 C -0.147 4.147 17 C -0.190 4.190 18 N -0.145 5.145 19 C -0.072 4.072 20 C -0.108 4.108 21 N -0.240 5.240 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.208 0.792 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.786 -5.011 -17.696 18.409 hybrid contribution 1.616 1.666 -0.398 2.355 sum 0.830 -3.345 -18.094 18.419 Atomic orbital electron populations 1.21629 0.93788 1.01190 1.00871 1.19624 0.95374 0.93468 0.85861 0.95116 1.60808 1.32545 1.32798 1.04047 1.19010 0.93784 0.89042 0.87919 0.97575 1.21501 0.97059 0.98270 1.00127 1.22079 1.01843 1.24230 1.11389 0.93919 1.25685 1.00172 0.97147 0.95004 1.70010 1.35790 1.34463 1.14854 0.85641 0.80270 0.78766 0.77448 1.20003 1.20420 1.19933 1.20757 1.06990 0.91680 0.95308 1.22629 1.08726 0.96345 0.91255 1.45627 1.48204 1.08816 1.11823 1.22352 1.02989 1.06190 0.75657 1.25692 1.04470 0.94008 0.86615 1.70079 1.17923 1.15694 1.20263 0.93250 0.93970 0.91113 0.85495 0.96037 0.92319 0.95579 0.92754 0.79159 0.89746 0.87053 0.88439 0.74524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 9.39 71.98 0.68 -3.70 16 2 C 0.17 7.13 2.88 44.17 0.13 7.26 16 3 H 0.03 1.42 7.75 -2.39 -0.02 1.40 16 4 N -0.67 -32.79 5.97 -477.15 -2.85 -35.64 16 5 C 0.21 11.57 2.36 44.17 0.10 11.67 16 6 H 0.01 0.37 7.11 -2.38 -0.02 0.36 16 7 C -0.11 -5.96 9.27 71.98 0.67 -5.29 16 8 C -0.56 -32.27 8.41 25.60 0.22 -32.05 16 9 H 0.04 2.50 7.69 -2.91 -0.02 2.48 16 10 C 0.02 1.13 5.31 84.65 0.45 1.58 16 11 N -0.91 -53.93 11.35 21.45 0.24 -53.69 16 12 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 16 C -0.02 -0.68 5.81 41.39 0.24 -0.44 16 17 C -0.06 -1.57 11.49 83.09 0.95 -0.62 16 18 N -0.46 -10.12 3.15 -552.53 -1.74 -11.86 16 19 C 0.07 0.68 11.18 127.77 1.43 2.11 16 20 C 0.17 4.49 12.56 180.27 2.26 6.75 16 21 N -0.52 -19.07 10.74 -188.32 -2.02 -21.10 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.68 7.43 -2.38 -0.02 1.67 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 25 H 0.33 16.77 7.67 -89.69 -0.69 16.08 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 3.36 6.14 -2.39 -0.01 3.34 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.26 14.69 8.31 -92.72 -0.77 13.92 16 30 H 0.19 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.24 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -71.57 285.94 3.17 -68.40 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.39 Total: 19.65 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 7.13 Total: -12.73 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.37 Total: -122.28 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.57 3.17 -68.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710173185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.260 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds