Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86788 * 120.00104 * 2 1 4 4 H 1.48503 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47306 * 300.00389 * 3 2 1 6 6 H 1.48505 * 109.47425 * 60.00484 * 3 2 1 7 7 C 1.38819 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99567 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99864 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47143 * 35.00150 * 10 9 7 12 12 C 1.52997 * 109.47175 * 274.99616 * 10 9 7 13 13 C 1.53778 * 113.61510 * 157.49787 * 12 10 9 14 14 C 1.53776 * 87.08273 * 220.01945 * 13 12 10 15 15 C 1.53779 * 113.61467 * 60.00072 * 12 10 9 16 16 C 1.53003 * 109.46987 * 154.99706 * 10 9 7 17 17 C 1.53876 * 110.03313 * 300.00178 * 16 10 9 18 18 C 1.54267 * 106.59870 * 240.71577 * 17 16 10 19 19 C 1.54891 * 104.19324 * 336.39035 * 18 17 16 20 20 C 1.54261 * 110.03320 * 182.83247 * 16 10 9 21 21 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00111 * 359.97438 * 9 7 2 23 23 H 1.09002 * 112.84615 * 288.80248 * 12 10 9 24 24 H 1.08997 * 113.61579 * 334.57222 * 13 12 10 25 25 H 1.09005 * 113.61418 * 105.46633 * 13 12 10 26 26 H 1.08998 * 113.61341 * 270.88294 * 14 13 12 27 27 H 1.08998 * 113.61439 * 139.97882 * 14 13 12 28 28 H 1.09001 * 113.61576 * 254.53261 * 15 12 10 29 29 H 1.09004 * 113.61288 * 25.43037 * 15 12 10 30 30 H 1.08998 * 110.05508 * 61.41259 * 16 10 9 31 31 H 1.08995 * 110.03160 * 359.97438 * 17 16 10 32 32 H 1.08998 * 110.03319 * 121.42855 * 17 16 10 33 33 H 1.09004 * 110.48597 * 95.06674 * 18 17 16 34 34 H 1.08994 * 110.48679 * 217.71200 * 18 17 16 35 35 H 1.09005 * 110.75269 * 279.62515 * 19 18 17 36 36 H 1.09004 * 110.91555 * 156.33330 * 19 18 17 37 37 H 1.09000 * 110.48928 * 261.57322 * 20 16 10 38 38 H 1.08999 * 110.48469 * 24.21732 * 20 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9692 -3.5509 0.5871 12 6 2.4207 -4.0351 -1.4391 13 6 3.6133 -5.0007 -1.5398 14 6 4.0765 -4.1774 -2.7532 15 6 3.3050 -2.9940 -2.1456 16 6 1.1813 -4.7525 0.6082 17 6 0.8086 -4.3849 2.0552 18 6 1.3795 -5.5008 2.9544 19 6 1.5054 -6.7222 2.0103 20 6 1.9656 -6.0789 0.6786 21 1 -0.4850 0.8400 0.0004 22 1 0.3554 -2.3881 0.0002 23 1 1.5560 -4.3442 -2.0264 24 1 4.2929 -4.9455 -0.6894 25 1 3.3277 -6.0228 -1.7889 26 1 3.6654 -4.5265 -3.7004 27 1 5.1549 -4.0229 -2.7900 28 1 2.7706 -2.3960 -2.8837 29 1 3.9004 -2.3901 -1.4608 30 1 0.2783 -4.8838 0.0120 31 1 1.2527 -3.4262 2.3231 32 1 -0.2752 -4.3378 2.1612 33 1 2.3577 -5.2156 3.3417 34 1 0.6934 -5.7200 3.7724 35 1 0.5417 -7.2166 1.8877 36 1 2.2536 -7.4238 2.3793 37 1 1.7073 -6.7201 -0.1641 38 1 3.0384 -5.8871 0.6984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711831300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 5.863401 kcal Electronic energy + Delta-G solvation = -16183.845114 eV Core-core repulsion = 13832.986215 eV Total energy + Delta-G solvation = -2350.858899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.12546 -36.98848 -34.03314 -31.32463 -28.77768 -28.06652 -25.60124 -24.80140 -23.62094 -21.18211 -20.20427 -19.21633 -18.46106 -16.91934 -15.51712 -15.15011 -14.70461 -14.22953 -14.02604 -13.47171 -12.99690 -12.87798 -12.12492 -11.81254 -11.38542 -11.27832 -11.14606 -10.90770 -10.82360 -10.68776 -10.59444 -10.40788 -10.25573 -10.11764 -9.95007 -9.82270 -9.69262 -9.32274 -9.22468 -8.72583 -6.83458 -5.68919 -2.95298 3.46204 3.52140 3.54002 4.64018 5.01731 5.06856 5.12726 5.28252 5.31302 5.37580 5.56543 5.71336 5.78249 5.89074 5.93965 5.98595 6.05494 6.09748 6.17451 6.20908 6.25223 6.29560 6.37544 6.40913 6.46294 6.54333 6.61077 6.71332 6.82357 6.87307 6.92006 7.04130 7.15577 7.29812 7.78584 8.49957 9.61165 10.21251 10.56118 11.54085 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.009991 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.459576 B = 2801.747636 C = 3711.688918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.223 4.223 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.194 3.806 11 H 0.045 0.955 12 C -0.119 4.119 13 C -0.135 4.135 14 C -0.153 4.153 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.114 4.114 21 H 0.252 0.748 22 H 0.382 0.618 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -12.215 0.528 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.731 3.269 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.063 0.937 12 C -0.140 4.140 13 C -0.173 4.173 14 C -0.190 4.190 15 C -0.149 4.149 16 C -0.113 4.113 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.164 4.164 20 C -0.152 4.152 21 H 0.062 0.938 22 H 0.216 0.784 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.804 -12.048 0.544 12.982 hybrid contribution 0.060 1.028 -0.150 1.041 sum 4.864 -11.020 0.394 12.052 Atomic orbital electron populations 1.69666 1.04990 1.25193 1.58469 1.24685 0.95426 0.97412 1.03726 0.86221 0.78817 0.84755 0.77086 1.20679 1.22091 1.22103 1.19248 0.90821 0.84070 1.41348 0.91273 1.42399 1.05694 0.99693 1.88157 1.20321 0.93888 0.85757 0.91633 0.93658 1.23160 0.95551 0.95426 0.99880 1.22972 0.98983 0.97512 0.97811 1.22938 0.99327 0.99165 0.97597 1.22659 0.97701 0.95396 0.99170 1.21987 0.98480 0.94552 0.96280 1.22128 1.00151 0.99017 0.94001 1.22373 1.00539 0.95642 0.97644 1.22511 1.00399 0.97190 0.96265 1.22440 1.00276 0.96112 0.96368 0.93799 0.78413 0.90878 0.90795 0.92679 0.91303 0.92674 0.92264 0.90166 0.91921 0.90286 0.92743 0.92145 0.92614 0.92160 0.92461 0.92411 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.22 -6.02 8.71 -15.06 -0.13 -6.15 16 8 H 0.07 1.83 6.74 -52.49 -0.35 1.48 16 9 N -0.72 -17.50 4.43 -53.42 -0.24 -17.73 16 10 C 0.19 3.78 1.52 -67.93 -0.10 3.67 16 11 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 12 C -0.12 -2.12 3.17 -89.81 -0.28 -2.40 16 13 C -0.13 -1.99 5.61 -25.92 -0.15 -2.13 16 14 C -0.15 -2.29 8.08 -25.92 -0.21 -2.50 16 15 C -0.11 -2.08 6.56 -25.92 -0.17 -2.25 16 16 C -0.09 -1.57 2.56 -89.50 -0.23 -1.80 16 17 C -0.12 -1.96 6.19 -25.61 -0.16 -2.12 16 18 C -0.12 -1.73 6.83 -25.07 -0.17 -1.91 16 19 C -0.13 -1.59 6.91 -24.74 -0.17 -1.76 16 20 C -0.11 -1.58 4.94 -25.08 -0.12 -1.70 16 21 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 23 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.07 1.07 7.36 -51.93 -0.38 0.69 16 25 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.61 6.77 -51.93 -0.35 1.26 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.57 7.37 -51.93 -0.38 1.19 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.94 6.25 -51.93 -0.32 0.61 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -28.33 291.04 -8.87 -37.19 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.73 Total: 7.72 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.99 Total: -21.63 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.49 Total: -45.14 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.33 -8.87 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.058 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds