Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86788 * 120.00104 * 2 1 4 4 H 1.48503 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47306 * 300.00389 * 3 2 1 6 6 H 1.48505 * 109.47425 * 60.00484 * 3 2 1 7 7 C 1.38819 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99567 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99864 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47143 * 35.00150 * 10 9 7 12 12 C 1.52997 * 109.47175 * 274.99616 * 10 9 7 13 13 C 1.53778 * 113.61510 * 157.49787 * 12 10 9 14 14 C 1.53776 * 87.08273 * 220.01945 * 13 12 10 15 15 C 1.53779 * 113.61467 * 60.00072 * 12 10 9 16 16 C 1.53003 * 109.46987 * 154.99706 * 10 9 7 17 17 C 1.53876 * 110.03313 * 300.00178 * 16 10 9 18 18 C 1.54267 * 106.59870 * 240.71577 * 17 16 10 19 19 C 1.54891 * 104.19324 * 336.39035 * 18 17 16 20 20 C 1.54261 * 110.03320 * 182.83247 * 16 10 9 21 21 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00111 * 359.97438 * 9 7 2 23 23 H 1.09002 * 112.84615 * 288.80248 * 12 10 9 24 24 H 1.08997 * 113.61579 * 334.57222 * 13 12 10 25 25 H 1.09005 * 113.61418 * 105.46633 * 13 12 10 26 26 H 1.08998 * 113.61341 * 270.88294 * 14 13 12 27 27 H 1.08998 * 113.61439 * 139.97882 * 14 13 12 28 28 H 1.09001 * 113.61576 * 254.53261 * 15 12 10 29 29 H 1.09004 * 113.61288 * 25.43037 * 15 12 10 30 30 H 1.08998 * 110.05508 * 61.41259 * 16 10 9 31 31 H 1.08995 * 110.03160 * 359.97438 * 17 16 10 32 32 H 1.08998 * 110.03319 * 121.42855 * 17 16 10 33 33 H 1.09004 * 110.48597 * 95.06674 * 18 17 16 34 34 H 1.08994 * 110.48679 * 217.71200 * 18 17 16 35 35 H 1.09005 * 110.75269 * 279.62515 * 19 18 17 36 36 H 1.09004 * 110.91555 * 156.33330 * 19 18 17 37 37 H 1.09000 * 110.48928 * 261.57322 * 20 16 10 38 38 H 1.08999 * 110.48469 * 24.21732 * 20 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9692 -3.5509 0.5871 12 6 2.4207 -4.0351 -1.4391 13 6 3.6133 -5.0007 -1.5398 14 6 4.0765 -4.1774 -2.7532 15 6 3.3050 -2.9940 -2.1456 16 6 1.1813 -4.7525 0.6082 17 6 0.8086 -4.3849 2.0552 18 6 1.3795 -5.5008 2.9544 19 6 1.5054 -6.7222 2.0103 20 6 1.9656 -6.0789 0.6786 21 1 -0.4850 0.8400 0.0004 22 1 0.3554 -2.3881 0.0002 23 1 1.5560 -4.3442 -2.0264 24 1 4.2929 -4.9455 -0.6894 25 1 3.3277 -6.0228 -1.7889 26 1 3.6654 -4.5265 -3.7004 27 1 5.1549 -4.0229 -2.7900 28 1 2.7706 -2.3960 -2.8837 29 1 3.9004 -2.3901 -1.4608 30 1 0.2783 -4.8838 0.0120 31 1 1.2527 -3.4262 2.3231 32 1 -0.2752 -4.3378 2.1612 33 1 2.3577 -5.2156 3.3417 34 1 0.6934 -5.7200 3.7724 35 1 0.5417 -7.2166 1.8877 36 1 2.2536 -7.4238 2.3793 37 1 1.7073 -6.7201 -0.1641 38 1 3.0384 -5.8871 0.6984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711831300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = -9.199656 kcal Electronic energy + Delta-G solvation = -16184.498298 eV Core-core repulsion = 13832.986215 eV Total energy + Delta-G solvation = -2351.512082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53223 -38.25050 -35.90231 -33.18090 -30.35292 -29.37373 -27.03664 -26.15132 -25.53952 -22.69657 -21.34046 -20.70997 -19.80145 -18.93171 -16.92170 -16.60937 -16.35080 -15.75098 -15.34466 -15.17810 -14.82753 -14.10039 -13.51477 -13.21870 -13.13410 -12.95117 -12.64890 -12.56433 -12.37412 -12.15052 -11.96056 -11.81542 -11.71903 -11.49060 -11.38793 -11.34255 -11.14624 -11.00141 -10.82975 -10.49190 -8.87136 -7.87667 -5.12232 1.44927 1.45413 1.54409 2.58610 3.45619 3.71464 3.80706 3.90272 3.96195 4.04320 4.14066 4.22104 4.45756 4.56980 4.67395 4.71813 4.82326 4.87266 4.93847 4.94301 4.99819 5.03594 5.10489 5.16410 5.19682 5.23053 5.29493 5.33947 5.40891 5.52114 5.58234 5.58411 5.67293 5.74436 5.83549 6.35012 7.40850 8.20038 8.42654 9.36613 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.009991 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.459576 B = 2801.747636 C = 3711.688918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.298 1.298 7 C -0.208 4.208 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.193 3.807 11 H 0.035 0.965 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.107 4.107 21 H 0.246 0.754 22 H 0.369 0.631 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -14.658 0.413 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.225 1.225 7 C -0.340 4.340 8 H 0.090 0.910 9 N -0.368 5.368 10 C 0.085 3.915 11 H 0.053 0.947 12 C -0.143 4.143 13 C -0.154 4.154 14 C -0.174 4.174 15 C -0.164 4.164 16 C -0.110 4.110 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.145 4.145 21 H 0.055 0.945 22 H 0.200 0.800 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.499 -14.534 0.427 15.926 hybrid contribution -0.448 1.760 -0.105 1.819 sum 6.050 -12.774 0.322 14.138 Atomic orbital electron populations 1.69816 1.06378 1.25286 1.61003 1.25391 0.96210 1.00496 1.05273 0.85265 0.78386 0.81044 0.76373 1.19198 1.22600 1.22526 1.19533 0.90985 0.85069 1.38429 0.91034 1.42591 1.05187 1.00945 1.88046 1.20508 0.93416 0.84639 0.92959 0.94727 1.23075 0.96569 0.96704 0.97940 1.22872 0.96684 0.98030 0.97819 1.22870 0.99887 0.96443 0.98189 1.22671 0.98516 0.96345 0.98901 1.21945 0.98091 0.95482 0.95505 1.22082 0.99527 0.98596 0.95262 1.22349 1.00615 0.95051 0.97753 1.22493 1.01662 0.96663 0.94704 1.22409 0.99913 0.94189 0.97985 0.94539 0.79988 0.91424 0.90182 0.90027 0.89884 0.91059 0.94767 0.92210 0.92851 0.94052 0.93586 0.92019 0.91334 0.91273 0.90008 0.90747 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.96 47.38 29.55 68.60 2.03 49.41 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 7 C -0.21 -11.47 8.71 84.04 0.73 -10.74 16 8 H 0.07 3.86 6.74 -2.91 -0.02 3.84 16 9 N -0.73 -36.61 4.43 -322.93 -1.43 -38.04 16 10 C 0.19 7.52 1.52 44.99 0.07 7.59 16 11 H 0.03 1.43 7.86 -2.39 -0.02 1.41 16 12 C -0.12 -4.23 3.17 -10.27 -0.03 -4.26 16 13 C -0.12 -3.04 5.61 31.12 0.17 -2.86 16 14 C -0.14 -3.71 8.08 31.12 0.25 -3.46 16 15 C -0.13 -4.66 6.56 31.12 0.20 -4.46 16 16 C -0.09 -2.99 2.56 -10.07 -0.03 -3.02 16 17 C -0.12 -3.99 6.19 31.32 0.19 -3.80 16 18 C -0.12 -3.11 6.83 31.67 0.22 -2.90 16 19 C -0.12 -2.53 6.91 31.89 0.22 -2.31 16 20 C -0.11 -2.62 4.94 31.67 0.16 -2.46 16 21 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 22 H 0.37 20.32 7.80 -92.70 -0.72 19.59 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.08 2.04 7.36 -2.39 -0.02 2.02 16 25 H 0.08 1.77 8.08 -2.38 -0.02 1.75 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.42 6.77 -2.39 -0.02 2.40 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.70 7.37 -2.39 -0.02 1.68 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.73 6.25 -2.39 -0.01 1.71 16 Total: -1.00 -62.70 291.04 3.79 -58.91 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.29 Total: 27.13 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 2.63 Total: -37.00 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -1.15 Total: -98.44 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -62.70 3.79 -58.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.707 kcal (2) G-P(sol) polarization free energy of solvation -62.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds