Wall clock time and date at job start Mon Mar 30 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99970 * 2 1 4 4 H 1.48505 * 109.46792 * 269.99697 * 3 2 1 5 5 H 1.48499 * 109.47317 * 29.99188 * 3 2 1 6 6 H 1.48502 * 109.47379 * 149.99638 * 3 2 1 7 7 C 1.37883 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99659 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46738 * 180.02562 * 9 7 2 11 11 N 1.46908 * 109.46843 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99789 * 180.02562 * 11 10 9 13 13 H 1.09000 * 112.95204 * 26.91028 * 12 11 10 14 14 C 1.53957 * 113.66284 * 255.49339 * 12 11 10 15 15 C 1.53228 * 86.37232 * 218.92422 * 14 12 11 16 16 H 1.09002 * 111.34271 * 274.78474 * 15 14 12 17 17 C 1.51618 * 114.83372 * 145.94984 * 15 14 12 18 18 C 1.51634 * 115.09848 * 289.87475 * 17 15 14 19 19 C 1.52598 * 111.07114 * 313.58773 * 18 17 15 20 20 C 1.52981 * 108.83188 * 63.70836 * 19 18 17 21 21 C 1.52883 * 87.55750 * 26.86919 * 15 14 12 22 22 H 1.08992 * 113.95954 * 218.50252 * 21 15 14 23 23 H 0.96998 * 119.99853 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47277 * 60.00449 * 9 7 2 25 25 H 1.08997 * 109.47677 * 300.00262 * 9 7 2 26 26 H 1.09000 * 109.47322 * 60.00830 * 10 9 7 27 27 H 1.08999 * 109.47188 * 299.99668 * 10 9 7 28 28 H 1.00902 * 111.00041 * 303.95346 * 11 10 9 29 29 H 1.09002 * 113.75010 * 333.31635 * 14 12 11 30 30 H 1.08997 * 113.74430 * 104.53333 * 14 12 11 31 31 H 1.09002 * 107.74930 * 168.68849 * 17 15 14 32 32 H 1.08996 * 108.38684 * 51.54051 * 17 15 14 33 33 H 1.08997 * 109.15689 * 193.17733 * 18 17 15 34 34 H 1.09001 * 109.11211 * 73.97110 * 18 17 15 35 35 H 1.09001 * 109.57530 * 303.89814 * 19 18 17 36 36 H 1.09002 * 109.57599 * 183.51158 * 19 18 17 37 37 H 1.09001 * 109.51686 * 176.41387 * 20 19 18 38 38 H 1.08998 * 109.56065 * 56.27386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0022 12 6 6.0171 -4.0079 0.0015 13 1 5.3342 -4.7251 -0.4539 14 6 6.5672 -4.4593 1.3667 15 6 7.6803 -5.1571 0.5781 16 1 7.3719 -6.1499 0.2505 17 6 9.0319 -5.1757 1.2651 18 6 9.7266 -3.8308 1.3541 19 6 9.6808 -3.0999 0.0153 20 6 8.2221 -2.7979 -0.3327 21 6 7.4661 -4.1150 -0.5198 22 1 7.5455 -4.5145 -1.5307 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.8528 -2.1100 -0.7787 29 1 6.9198 -3.6384 1.9911 30 1 5.9097 -5.1463 1.8994 31 1 9.6753 -5.8616 0.7140 32 1 8.8990 -5.5639 2.2748 33 1 10.7665 -3.9839 1.6427 34 1 9.2313 -3.2226 2.1109 35 1 10.1185 -3.7294 -0.7596 36 1 10.2394 -2.1669 0.0893 37 1 8.1801 -2.2198 -1.2558 38 1 7.7647 -2.2271 0.4755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712416021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:08 Heat of formation + Delta-G solvation = -5.661504 kcal Electronic energy + Delta-G solvation = -15513.860442 eV Core-core repulsion = 13162.501785 eV Total energy + Delta-G solvation = -2351.358656 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43805 -35.63308 -33.78021 -32.38019 -31.07390 -29.13418 -26.08298 -24.53070 -23.28728 -22.04461 -20.43786 -20.09051 -17.63907 -16.74578 -16.27730 -15.27540 -14.63441 -14.52268 -14.29115 -13.91323 -13.58256 -13.04767 -12.60141 -12.47569 -12.44493 -11.66174 -11.56494 -11.43835 -11.29940 -11.03802 -10.92618 -10.66760 -10.22153 -10.09787 -9.96206 -9.82147 -9.73246 -9.40724 -9.19635 -8.51391 -7.86063 -6.02177 -4.00252 3.33667 3.41074 3.47359 4.48448 4.49251 4.53205 4.59957 4.84142 5.01174 5.05335 5.13968 5.25246 5.32511 5.40292 5.52127 5.60252 5.71011 5.76864 5.84001 5.93255 6.06450 6.08222 6.12192 6.17491 6.20642 6.23475 6.32138 6.47600 6.57214 6.65849 6.82512 7.20951 7.42182 7.69346 7.81429 7.96588 8.56116 9.02202 9.60439 11.11293 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047501 B = 0.005485 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.321825 B = 5103.850500 C = 5441.547255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.680 5.680 12 C 0.059 3.941 13 H 0.064 0.936 14 C -0.121 4.121 15 C -0.103 4.103 16 H 0.079 0.921 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.104 4.104 21 C -0.105 4.105 22 H 0.068 0.932 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.335 0.665 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.521 -8.522 0.475 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.056 4.056 11 N -0.310 5.310 12 C -0.052 4.052 13 H 0.082 0.918 14 C -0.160 4.160 15 C -0.122 4.122 16 H 0.098 0.902 17 C -0.139 4.139 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.124 4.124 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.390 -8.338 1.162 21.138 hybrid contribution -0.023 0.510 -1.002 1.124 sum 19.367 -7.828 0.161 20.889 Atomic orbital electron populations 1.69917 1.06338 1.26885 1.51264 1.25010 0.94720 0.99204 0.94503 0.86747 0.80509 0.83439 0.78435 1.20418 1.21449 1.18753 1.21089 0.89472 0.94477 1.50861 0.91180 1.19545 0.96609 0.91990 0.96612 1.21990 0.84476 0.99813 0.99294 1.60800 1.09603 1.11623 1.48996 1.23192 0.93785 0.91199 0.97007 0.91766 1.23052 0.96589 0.99662 0.96675 1.21790 0.95175 0.98039 0.97159 0.90219 1.20689 0.95623 0.97345 1.00230 1.21116 0.99667 0.96519 0.97928 1.21374 0.96968 0.99788 0.97178 1.21350 0.94439 0.95850 1.02550 1.22568 0.95777 0.96209 0.97803 0.91381 0.92759 0.95705 0.97402 0.96191 0.91846 0.84670 0.89337 0.92313 0.93011 0.92232 0.92456 0.91994 0.92468 0.92194 0.92207 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.50 5.49 -3.82 -0.02 1.48 16 11 N -0.68 -11.55 5.42 -105.47 -0.57 -12.12 16 12 C 0.06 0.84 3.95 -66.53 -0.26 0.58 16 13 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 14 C -0.12 -1.59 7.06 -26.11 -0.18 -1.77 16 15 C -0.10 -1.13 3.81 -91.30 -0.35 -1.48 16 16 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.10 -0.98 5.47 -28.12 -0.15 -1.13 16 18 C -0.11 -1.09 5.76 -27.63 -0.16 -1.25 16 19 C -0.12 -1.13 5.90 -26.95 -0.16 -1.29 16 20 C -0.10 -1.20 4.36 -26.74 -0.12 -1.32 16 21 C -0.10 -1.24 4.16 -89.96 -0.37 -1.61 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 26 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.33 5.43 7.78 -39.29 -0.31 5.12 16 29 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.15 6.55 -51.93 -0.34 0.81 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -30.15 291.27 -9.27 -39.42 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.86 Total: 0.18 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.33 Total: -21.77 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.20 Total: -39.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.15 -9.27 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712416021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.755 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds