Wall clock time and date at job start Mon Mar 30 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99970 * 2 1 4 4 H 1.48505 * 109.46792 * 269.99697 * 3 2 1 5 5 H 1.48499 * 109.47317 * 29.99188 * 3 2 1 6 6 H 1.48502 * 109.47379 * 149.99638 * 3 2 1 7 7 C 1.37883 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99659 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46738 * 180.02562 * 9 7 2 11 11 N 1.46908 * 109.46843 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99789 * 180.02562 * 11 10 9 13 13 H 1.09000 * 112.95204 * 26.91028 * 12 11 10 14 14 C 1.53957 * 113.66284 * 255.49339 * 12 11 10 15 15 C 1.53228 * 86.37232 * 218.92422 * 14 12 11 16 16 H 1.09002 * 111.34271 * 274.78474 * 15 14 12 17 17 C 1.51618 * 114.83372 * 145.94984 * 15 14 12 18 18 C 1.51634 * 115.09848 * 289.87475 * 17 15 14 19 19 C 1.52598 * 111.07114 * 313.58773 * 18 17 15 20 20 C 1.52981 * 108.83188 * 63.70836 * 19 18 17 21 21 C 1.52883 * 87.55750 * 26.86919 * 15 14 12 22 22 H 1.08992 * 113.95954 * 218.50252 * 21 15 14 23 23 H 0.96998 * 119.99853 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47277 * 60.00449 * 9 7 2 25 25 H 1.08997 * 109.47677 * 300.00262 * 9 7 2 26 26 H 1.09000 * 109.47322 * 60.00830 * 10 9 7 27 27 H 1.08999 * 109.47188 * 299.99668 * 10 9 7 28 28 H 1.00902 * 111.00041 * 303.95346 * 11 10 9 29 29 H 1.09002 * 113.75010 * 333.31635 * 14 12 11 30 30 H 1.08997 * 113.74430 * 104.53333 * 14 12 11 31 31 H 1.09002 * 107.74930 * 168.68849 * 17 15 14 32 32 H 1.08996 * 108.38684 * 51.54051 * 17 15 14 33 33 H 1.08997 * 109.15689 * 193.17733 * 18 17 15 34 34 H 1.09001 * 109.11211 * 73.97110 * 18 17 15 35 35 H 1.09001 * 109.57530 * 303.89814 * 19 18 17 36 36 H 1.09002 * 109.57599 * 183.51158 * 19 18 17 37 37 H 1.09001 * 109.51686 * 176.41387 * 20 19 18 38 38 H 1.08998 * 109.56065 * 56.27386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0022 12 6 6.0171 -4.0079 0.0015 13 1 5.3342 -4.7251 -0.4539 14 6 6.5672 -4.4593 1.3667 15 6 7.6803 -5.1571 0.5781 16 1 7.3719 -6.1499 0.2505 17 6 9.0319 -5.1757 1.2651 18 6 9.7266 -3.8308 1.3541 19 6 9.6808 -3.0999 0.0153 20 6 8.2221 -2.7979 -0.3327 21 6 7.4661 -4.1150 -0.5198 22 1 7.5455 -4.5145 -1.5307 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.8528 -2.1100 -0.7787 29 1 6.9198 -3.6384 1.9911 30 1 5.9097 -5.1463 1.8994 31 1 9.6753 -5.8616 0.7140 32 1 8.8990 -5.5639 2.2748 33 1 10.7665 -3.9839 1.6427 34 1 9.2313 -3.2226 2.1109 35 1 10.1185 -3.7294 -0.7596 36 1 10.2394 -2.1669 0.0893 37 1 8.1801 -2.2198 -1.2558 38 1 7.7647 -2.2271 0.4755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712416021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:08 Heat of formation + Delta-G solvation = -23.545908 kcal Electronic energy + Delta-G solvation = -15514.635968 eV Core-core repulsion = 13162.501785 eV Total energy + Delta-G solvation = -2352.134182 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41899 -37.03095 -35.24983 -34.14039 -32.15296 -30.81707 -27.07584 -26.19769 -24.45297 -23.06116 -22.15746 -21.22542 -18.96800 -18.52424 -17.31405 -16.63054 -16.27414 -15.72780 -15.43080 -15.27007 -14.81789 -14.44633 -14.37812 -13.74892 -13.40161 -13.27012 -12.98016 -12.54487 -12.45386 -12.41841 -11.98548 -11.83577 -11.82505 -11.64467 -11.55131 -11.41372 -10.92968 -10.78052 -10.67476 -10.58974 -9.26822 -8.31175 -6.36032 1.35769 1.38568 1.51862 2.36171 3.04396 3.35364 3.54561 3.63510 3.88170 3.98409 4.24645 4.27819 4.32174 4.43847 4.52078 4.54489 4.66830 4.71583 4.79049 4.91634 4.94887 5.01757 5.06680 5.14857 5.22502 5.25460 5.33212 5.36373 5.41564 5.46181 5.56365 5.61373 5.66057 5.73772 6.20821 6.28002 6.55829 6.72969 7.29024 8.85727 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047501 B = 0.005485 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.321825 B = 5103.850500 C = 5441.547255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.087 3.913 11 N -0.675 5.675 12 C 0.045 3.955 13 H 0.058 0.942 14 C -0.123 4.123 15 C -0.092 4.092 16 H 0.088 0.912 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.104 4.104 21 C -0.095 4.095 22 H 0.077 0.923 23 H 0.267 0.733 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.050 0.950 28 H 0.341 0.659 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.340 -8.184 0.185 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.040 4.040 10 C -0.042 4.042 11 N -0.306 5.306 12 C -0.065 4.065 13 H 0.076 0.924 14 C -0.162 4.162 15 C -0.110 4.110 16 H 0.107 0.893 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.142 4.142 21 C -0.114 4.114 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.160 0.840 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.229 -8.021 0.871 23.648 hybrid contribution -0.966 0.319 -0.903 1.360 sum 21.264 -7.702 -0.032 22.616 Atomic orbital electron populations 1.70067 1.08350 1.28282 1.52503 1.26019 0.95630 1.03613 0.93872 0.85581 0.79416 0.77896 0.79272 1.18954 1.20874 1.17147 1.21420 0.92024 0.93166 1.50822 0.95239 1.19422 0.93479 0.94445 0.96698 1.21646 0.86991 0.97191 0.98390 1.60733 1.06859 1.13664 1.49390 1.23377 0.95163 0.89383 0.98559 0.92394 1.23040 0.97482 0.99608 0.96042 1.21763 0.95295 0.97936 0.96046 0.89348 1.20692 0.94843 0.97803 1.00508 1.21132 1.00485 0.96183 0.97471 1.21355 0.95637 1.00408 0.97534 1.21328 0.95556 0.95335 1.01976 1.22560 0.93445 0.96794 0.98571 0.90426 0.92393 0.95946 0.96344 0.96887 0.93155 0.84006 0.90240 0.92648 0.91586 0.91820 0.90862 0.93158 0.91535 0.91504 0.91918 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 2 C 0.01 0.33 5.47 84.66 0.46 0.79 16 3 Si 0.96 45.30 27.47 68.60 1.88 47.19 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.54 -31.97 9.66 25.60 0.25 -31.73 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.00 -0.13 4.30 29.85 0.13 0.00 16 10 C 0.09 3.63 5.49 86.30 0.47 4.10 16 11 N -0.68 -22.47 5.42 -487.60 -2.64 -25.11 16 12 C 0.05 1.25 3.95 45.68 0.18 1.43 16 13 H 0.06 1.69 7.90 -2.39 -0.02 1.67 16 14 C -0.12 -3.11 7.06 30.99 0.22 -2.89 16 15 C -0.09 -1.81 3.81 -11.23 -0.04 -1.85 16 16 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 17 C -0.10 -1.66 5.47 29.69 0.16 -1.50 16 18 C -0.12 -1.89 5.76 30.01 0.17 -1.72 16 19 C -0.11 -1.88 5.90 30.45 0.18 -1.70 16 20 C -0.10 -2.18 4.36 30.59 0.13 -2.05 16 21 C -0.09 -2.05 4.16 -10.36 -0.04 -2.09 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 25 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 26 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.34 10.61 7.78 -89.69 -0.70 9.91 16 29 H 0.08 2.16 7.49 -2.39 -0.02 2.14 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.94 7.96 -2.39 -0.02 0.92 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.68 6.55 -2.39 -0.02 1.67 16 Total: -1.00 -65.18 291.27 2.07 -63.11 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.25 Total: 14.57 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 2.27 Total: -39.20 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.34 Total: -85.67 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -65.18 2.07 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712416021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.563 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds