Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.08999 * 112.92038 * 334.66891 * 12 11 10 14 14 C 1.53893 * 113.70902 * 106.15578 * 12 11 10 15 15 C 1.54161 * 86.82464 * 139.95243 * 14 12 11 16 16 H 1.09006 * 113.00953 * 220.80578 * 15 14 12 17 17 C 1.51988 * 112.36533 * 92.32034 * 15 14 12 18 18 C 1.52526 * 111.38158 * 223.51392 * 17 15 14 19 19 C 1.53110 * 108.92758 * 57.52886 * 18 17 15 20 20 C 1.52585 * 108.82855 * 291.93341 * 19 18 17 21 21 C 1.51121 * 111.53706 * 56.96076 * 20 19 18 22 22 H 1.08991 * 111.08358 * 191.18324 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 27 27 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 28 28 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 29 29 H 1.08997 * 113.65420 * 254.43624 * 14 12 11 30 30 H 1.08998 * 113.65568 * 25.46980 * 14 12 11 31 31 H 1.09001 * 109.09883 * 344.00077 * 17 15 14 32 32 H 1.09000 * 109.09899 * 103.01829 * 17 15 14 33 33 H 1.09001 * 109.55987 * 177.36350 * 18 17 15 34 34 H 1.09000 * 109.56069 * 297.69247 * 18 17 15 35 35 H 1.09000 * 109.58064 * 51.74038 * 19 18 17 36 36 H 1.09002 * 109.57736 * 172.00233 * 19 18 17 37 37 H 1.09002 * 109.06363 * 177.42865 * 20 19 18 38 38 H 1.08994 * 109.06754 * 296.43735 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.4078 -5.8366 -0.4084 14 6 2.5204 -6.7966 1.3794 15 6 2.5578 -8.1143 0.5801 16 1 1.9567 -8.9037 1.0316 17 6 3.9768 -8.5678 0.2786 18 6 4.1115 -9.0525 -1.1613 19 6 3.6895 -7.9245 -2.1067 20 6 2.1895 -7.6899 -1.9547 21 6 1.8199 -7.3711 -0.5244 22 1 0.7396 -7.3986 -0.3831 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.8721 -3.6081 -0.8798 27 1 2.8721 -3.6002 0.9002 28 1 0.8749 -4.9806 0.7986 29 1 3.4401 -6.5910 1.9270 30 1 1.6263 -6.6820 1.9922 31 1 4.6596 -7.7334 0.4393 32 1 4.2429 -9.3802 0.9548 33 1 5.1481 -9.3257 -1.3589 34 1 3.4682 -9.9186 -1.3165 35 1 4.2295 -7.0127 -1.8514 36 1 3.9146 -8.2065 -3.1352 37 1 1.8930 -6.8570 -2.5922 38 1 1.6552 -8.5864 -2.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712431167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = -12.394494 kcal Electronic energy + Delta-G solvation = -15442.962925 eV Core-core repulsion = 13091.312304 eV Total energy + Delta-G solvation = -2351.650621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45387 -35.56496 -33.70007 -32.32795 -31.04222 -28.76761 -25.89225 -24.39221 -22.99730 -21.97049 -21.03778 -20.47036 -17.69875 -16.45244 -15.84938 -15.02768 -14.60116 -14.39681 -14.11984 -13.79493 -13.67717 -13.24439 -12.45594 -12.25918 -12.24108 -11.64343 -11.56156 -11.35941 -11.19290 -10.96335 -10.90310 -10.81233 -10.54927 -10.08514 -10.01551 -9.83259 -9.73964 -9.21912 -9.06441 -8.32955 -7.66109 -5.97485 -3.99967 3.33547 3.39476 3.42745 4.44661 4.50794 4.59553 4.71331 4.85238 5.03562 5.11202 5.25681 5.32328 5.38413 5.44109 5.47496 5.65749 5.72422 5.82035 5.91341 5.95453 6.02427 6.04758 6.16290 6.19879 6.27619 6.35619 6.37922 6.48094 6.62558 6.65690 7.02288 7.57757 7.78356 7.87374 8.02411 8.13142 8.46901 9.07429 9.63715 11.14008 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.004928 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.894972 B = 5680.708725 C = 5743.914200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.681 5.681 12 C 0.074 3.926 13 H 0.092 0.908 14 C -0.170 4.170 15 C -0.102 4.102 16 H 0.069 0.931 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.104 4.104 21 C -0.091 4.091 22 H 0.084 0.916 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.337 0.663 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -17.595 -0.379 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.310 5.310 12 C -0.037 4.037 13 H 0.110 0.890 14 C -0.209 4.209 15 C -0.121 4.121 16 H 0.087 0.913 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.110 4.110 22 H 0.103 0.897 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.014 -17.449 -1.061 18.487 hybrid contribution 0.706 1.016 1.011 1.598 sum 6.721 -16.433 -0.050 17.754 Atomic orbital electron populations 1.69972 1.06036 1.26551 1.50757 1.24998 0.94828 0.99187 0.95330 0.86596 0.79794 0.83492 0.78115 1.20626 1.21225 1.19945 1.21186 0.92965 0.91070 1.50749 0.92810 1.19078 0.94063 0.90534 0.97636 1.22156 0.96928 0.88657 0.98405 1.60493 1.19230 1.02058 1.49222 1.23074 0.96094 0.90220 0.94351 0.89033 1.23914 1.01884 0.97246 0.97904 1.21746 0.96324 0.96350 0.97660 0.91301 1.21059 0.95553 1.00583 0.96559 1.21413 1.00637 0.98315 0.94967 1.21483 0.96759 0.98684 0.98794 1.20875 0.95495 1.01261 0.96542 1.21900 0.99935 0.95539 0.93617 0.89720 0.93015 0.96879 0.95710 0.92538 0.96795 0.84509 0.91826 0.90237 0.92042 0.92327 0.92322 0.92129 0.91886 0.92264 0.91315 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.44 5.48 -3.83 -0.02 1.42 16 11 N -0.68 -12.46 6.62 -105.97 -0.70 -13.16 16 12 C 0.07 1.10 3.37 -66.99 -0.23 0.87 16 13 H 0.09 1.42 6.59 -51.93 -0.34 1.08 16 14 C -0.17 -2.19 7.14 -25.67 -0.18 -2.37 16 15 C -0.10 -1.16 4.10 -90.93 -0.37 -1.53 16 16 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 17 C -0.10 -1.02 5.43 -27.49 -0.15 -1.17 16 18 C -0.12 -1.11 5.91 -26.92 -0.16 -1.27 16 19 C -0.12 -1.29 5.72 -26.89 -0.15 -1.45 16 20 C -0.10 -1.25 5.59 -27.89 -0.16 -1.41 16 21 C -0.09 -1.17 3.59 -91.72 -0.33 -1.49 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.34 5.99 8.22 -39.29 -0.32 5.66 16 29 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 30 H 0.08 1.02 7.84 -51.93 -0.41 0.61 16 31 H 0.06 0.66 7.58 -51.93 -0.39 0.27 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 35 H 0.06 0.74 6.92 -51.93 -0.36 0.38 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -29.74 295.63 -9.68 -39.42 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.85 Total: 0.62 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.31 Total: -21.67 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.04 Total: -39.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.74 -9.68 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712431167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds