Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.08999 * 112.92038 * 334.66891 * 12 11 10 14 14 C 1.53893 * 113.70902 * 106.15578 * 12 11 10 15 15 C 1.54161 * 86.82464 * 139.95243 * 14 12 11 16 16 H 1.09006 * 113.00953 * 220.80578 * 15 14 12 17 17 C 1.51988 * 112.36533 * 92.32034 * 15 14 12 18 18 C 1.52526 * 111.38158 * 223.51392 * 17 15 14 19 19 C 1.53110 * 108.92758 * 57.52886 * 18 17 15 20 20 C 1.52585 * 108.82855 * 291.93341 * 19 18 17 21 21 C 1.51121 * 111.53706 * 56.96076 * 20 19 18 22 22 H 1.08991 * 111.08358 * 191.18324 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 27 27 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 28 28 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 29 29 H 1.08997 * 113.65420 * 254.43624 * 14 12 11 30 30 H 1.08998 * 113.65568 * 25.46980 * 14 12 11 31 31 H 1.09001 * 109.09883 * 344.00077 * 17 15 14 32 32 H 1.09000 * 109.09899 * 103.01829 * 17 15 14 33 33 H 1.09001 * 109.55987 * 177.36350 * 18 17 15 34 34 H 1.09000 * 109.56069 * 297.69247 * 18 17 15 35 35 H 1.09000 * 109.58064 * 51.74038 * 19 18 17 36 36 H 1.09002 * 109.57736 * 172.00233 * 19 18 17 37 37 H 1.09002 * 109.06363 * 177.42865 * 20 19 18 38 38 H 1.08994 * 109.06754 * 296.43735 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.4078 -5.8366 -0.4084 14 6 2.5204 -6.7966 1.3794 15 6 2.5578 -8.1143 0.5801 16 1 1.9567 -8.9037 1.0316 17 6 3.9768 -8.5678 0.2786 18 6 4.1115 -9.0525 -1.1613 19 6 3.6895 -7.9245 -2.1067 20 6 2.1895 -7.6899 -1.9547 21 6 1.8199 -7.3711 -0.5244 22 1 0.7396 -7.3986 -0.3831 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.8721 -3.6081 -0.8798 27 1 2.8721 -3.6002 0.9002 28 1 0.8749 -4.9806 0.7986 29 1 3.4401 -6.5910 1.9270 30 1 1.6263 -6.6820 1.9922 31 1 4.6596 -7.7334 0.4393 32 1 4.2429 -9.3802 0.9548 33 1 5.1481 -9.3257 -1.3589 34 1 3.4682 -9.9186 -1.3165 35 1 4.2295 -7.0127 -1.8514 36 1 3.9146 -8.2065 -3.1352 37 1 1.8930 -6.8570 -2.5922 38 1 1.6552 -8.5864 -2.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712431167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = -29.846063 kcal Electronic energy + Delta-G solvation = -15443.719682 eV Core-core repulsion = 13091.312304 eV Total energy + Delta-G solvation = -2352.407378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48798 -37.03417 -35.29287 -34.02798 -32.04082 -30.59929 -27.07157 -26.08982 -24.24028 -23.01978 -22.49766 -21.87049 -18.77750 -18.49473 -17.08548 -16.56549 -16.27520 -15.63332 -15.27639 -15.07258 -14.69732 -14.52874 -14.15631 -13.93341 -13.33521 -13.10489 -12.85081 -12.79045 -12.54347 -12.41651 -12.30799 -12.15283 -11.86911 -11.69768 -11.46088 -11.33715 -10.93990 -10.75208 -10.57697 -10.54246 -9.13931 -8.21301 -6.33289 1.39545 1.41484 1.52473 2.39891 3.11948 3.35503 3.59416 3.62746 3.83994 3.99056 4.20701 4.28344 4.34412 4.42705 4.56980 4.58602 4.62293 4.77596 4.81738 4.84254 4.95740 5.01512 5.05017 5.14725 5.16806 5.21448 5.30114 5.39378 5.41718 5.49697 5.60530 5.67421 5.68489 5.79676 6.16486 6.33764 6.57850 6.83898 7.36181 8.90979 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.004928 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.894972 B = 5680.708725 C = 5743.914200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.688 5.688 12 C 0.062 3.938 13 H 0.085 0.915 14 C -0.166 4.166 15 C -0.088 4.088 16 H 0.083 0.917 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.087 4.087 22 H 0.077 0.923 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.007 1.007 26 H 0.053 0.947 27 H 0.016 0.984 28 H 0.338 0.662 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -18.603 -0.160 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.317 5.317 12 C -0.048 4.048 13 H 0.104 0.896 14 C -0.206 4.206 15 C -0.107 4.107 16 H 0.102 0.898 17 C -0.138 4.138 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.107 4.107 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.484 -18.484 -0.842 19.959 hybrid contribution 0.204 1.299 0.926 1.608 sum 7.688 -17.185 0.084 18.827 Atomic orbital electron populations 1.70109 1.07869 1.27851 1.51386 1.25985 0.95770 1.03410 0.94518 0.85406 0.78610 0.78201 0.78563 1.19695 1.20559 1.18717 1.21609 0.93489 0.92294 1.51046 0.92250 1.18931 0.94314 0.92418 0.94935 1.21749 0.95513 0.88662 0.98250 1.60445 1.19916 1.01747 1.49609 1.23233 0.95400 0.89593 0.96589 0.89647 1.23876 1.02092 0.97774 0.96822 1.21705 0.97196 0.95801 0.95980 0.89846 1.21093 0.94312 1.00938 0.97497 1.21398 1.01706 0.97847 0.93937 1.21482 0.95473 0.98767 0.99969 1.20870 0.96765 1.01032 0.95502 1.21881 0.99609 0.94404 0.94780 0.90504 0.92695 0.99085 0.98893 0.92861 0.96599 0.84341 0.91504 0.90184 0.92817 0.90542 0.90918 0.91184 0.93308 0.91186 0.93479 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.74 5.23 29.85 0.16 1.90 16 10 C 0.09 3.85 5.48 86.31 0.47 4.32 16 11 N -0.69 -25.64 6.62 -489.17 -3.24 -28.88 16 12 C 0.06 1.83 3.37 45.38 0.15 1.98 16 13 H 0.09 2.64 6.59 -2.39 -0.02 2.62 16 14 C -0.17 -4.07 7.14 31.28 0.22 -3.85 16 15 C -0.09 -1.80 4.10 -10.99 -0.05 -1.85 16 16 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 17 C -0.10 -1.78 5.43 30.10 0.16 -1.62 16 18 C -0.11 -1.82 5.91 30.47 0.18 -1.64 16 19 C -0.12 -2.39 5.72 30.49 0.17 -2.21 16 20 C -0.10 -2.40 5.59 29.84 0.17 -2.23 16 21 C -0.09 -2.16 3.59 -11.51 -0.04 -2.20 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 26 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 27 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.34 12.30 8.22 -89.69 -0.74 11.56 16 29 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 30 H 0.08 1.96 7.84 -2.39 -0.02 1.94 16 31 H 0.05 1.04 7.58 -2.39 -0.02 1.02 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 35 H 0.05 1.11 6.92 -2.39 -0.02 1.09 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.05 295.63 1.64 -62.41 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.27 Total: 15.85 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.30 Total: -38.66 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.95 Total: -86.54 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.05 1.64 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712431167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.561 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds