Wall clock time and date at job start Mon Mar 30 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00559 * 180.02562 * 11 10 9 13 13 H 1.08998 * 113.18865 * 22.34269 * 12 11 10 14 14 C 1.55705 * 114.08042 * 249.46018 * 12 11 10 15 15 C 1.50260 * 84.12131 * 282.65031 * 14 12 11 16 16 H 1.09000 * 112.22483 * 76.87789 * 15 14 12 17 17 C 1.51392 * 125.29110 * 218.76320 * 15 14 12 18 18 C 1.54072 * 106.08322 * 159.76449 * 17 15 14 19 19 C 1.52338 * 112.60497 * 303.96317 * 18 17 15 20 20 C 1.54266 * 112.37375 * 53.22464 * 19 18 17 21 21 C 1.50304 * 114.08136 * 155.00277 * 12 11 10 22 22 H 1.09006 * 112.92037 * 190.03309 * 21 12 11 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.00905 * 110.99991 * 56.04757 * 11 10 9 29 29 H 1.08997 * 114.08711 * 36.43146 * 14 12 11 30 30 H 1.09000 * 114.08589 * 168.86285 * 14 12 11 31 31 H 1.09002 * 110.12192 * 40.62631 * 17 15 14 32 32 H 1.08994 * 110.22041 * 278.95692 * 17 15 14 33 33 H 1.09004 * 108.84864 * 183.16247 * 18 17 15 34 34 H 1.08995 * 108.85738 * 64.77416 * 18 17 15 35 35 H 1.08994 * 108.90567 * 292.47216 * 19 18 17 36 36 H 1.09004 * 108.81978 * 173.91380 * 19 18 17 37 37 H 1.09000 * 110.21175 * 183.86037 * 20 19 18 38 38 H 1.09002 * 110.21581 * 61.89302 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0018 13 1 3.4253 -5.8262 0.3826 14 6 2.4472 -6.8843 -1.3290 15 6 1.1601 -7.4608 -0.8105 16 1 0.3245 -6.7698 -0.9219 17 6 0.7278 -8.9045 -0.9542 18 6 -0.3418 -9.1397 0.1295 19 6 0.1597 -8.8076 1.5291 20 6 0.7491 -7.3848 1.6195 21 6 1.8543 -7.3349 0.5823 22 1 2.5999 -8.1154 0.7346 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 0.8739 -4.9846 -0.7800 29 1 2.3318 -6.2713 -2.2228 30 1 3.2601 -7.6066 -1.4033 31 1 1.5774 -9.5682 -0.7928 32 1 0.3029 -9.0739 -1.9435 33 1 -0.6456 -10.1862 0.1032 34 1 -1.2092 -8.5175 -0.0908 35 1 0.9294 -9.5270 1.8084 36 1 -0.6714 -8.8907 2.2294 37 1 1.1579 -7.2091 2.6145 38 1 -0.0171 -6.6445 1.3894 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712491988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:12 Heat of formation + Delta-G solvation = -4.455638 kcal Electronic energy + Delta-G solvation = -15480.115852 eV Core-core repulsion = 13128.809486 eV Total energy + Delta-G solvation = -2351.306366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.83919 -37.07170 -35.47620 -33.99673 -31.69736 -30.41250 -27.12495 -26.09111 -24.81171 -22.71788 -21.93784 -21.08461 -20.15443 -18.45022 -16.75409 -16.37252 -15.99220 -15.93538 -15.53465 -14.83231 -14.74917 -14.33945 -14.04000 -13.86896 -13.45156 -13.13411 -12.89981 -12.69512 -12.59226 -12.40996 -12.27839 -11.95406 -11.78839 -11.65344 -11.43149 -11.30277 -11.24997 -10.72742 -10.58055 -10.04437 -9.20711 -8.21294 -6.32926 1.40027 1.40607 1.54069 2.40086 3.12326 3.31278 3.36391 3.68461 3.87653 3.96953 4.19487 4.22935 4.49366 4.52449 4.62023 4.64599 4.67283 4.74032 4.80187 4.88101 4.91789 5.00508 5.05826 5.15097 5.16991 5.32323 5.38065 5.39092 5.45435 5.48010 5.58062 5.67732 5.70539 5.80890 6.15795 6.32014 6.54288 6.84559 7.36618 8.91272 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053436 B = 0.004992 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.863506 B = 5607.194163 C = 5764.981889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.670 5.670 12 C 0.066 3.934 13 H 0.074 0.926 14 C -0.143 4.143 15 C -0.125 4.125 16 H 0.071 0.929 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.097 4.097 21 C -0.110 4.110 22 H 0.102 0.898 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.010 1.010 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.337 0.663 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -18.683 -0.756 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.043 4.043 11 N -0.301 5.301 12 C -0.045 4.045 13 H 0.092 0.908 14 C -0.182 4.182 15 C -0.143 4.143 16 H 0.089 0.911 17 C -0.133 4.133 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.135 4.135 21 C -0.129 4.129 22 H 0.120 0.880 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.008 0.992 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.059 -18.590 -0.058 18.840 hybrid contribution 0.261 1.249 -0.853 1.535 sum 3.320 -17.341 -0.911 17.679 Atomic orbital electron populations 1.70119 1.07885 1.27764 1.51516 1.25987 0.95760 1.03429 0.94565 0.85353 0.79036 0.78534 0.77828 1.18523 1.20265 1.20315 1.21641 0.93542 0.92226 1.50832 0.92133 1.18919 0.94306 0.92422 0.94903 1.21794 0.95540 0.88319 0.98608 1.60448 1.19012 1.01184 1.49439 1.22389 0.95073 0.90220 0.96801 0.90757 1.23233 0.98520 0.99814 0.96652 1.22335 0.96362 0.97493 0.98143 0.91108 1.21277 0.99011 0.94540 0.98489 1.21488 0.98032 1.01431 0.94308 1.21522 1.00516 0.95966 0.96917 1.21231 0.97317 0.96813 0.98109 1.22617 0.97709 0.96872 0.95698 0.88025 0.92727 0.98861 0.99206 0.96290 0.92509 0.84353 0.92713 0.87670 0.90813 0.91806 0.90856 0.93404 0.91482 0.92150 0.93019 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.75 5.23 29.85 0.16 1.91 16 10 C 0.09 3.74 5.47 86.30 0.47 4.21 16 11 N -0.67 -24.49 5.99 -503.87 -3.02 -27.51 16 12 C 0.07 1.90 4.44 42.57 0.19 2.09 16 13 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 14 C -0.14 -3.37 7.59 28.34 0.21 -3.15 16 15 C -0.12 -2.90 2.94 -13.52 -0.04 -2.94 16 16 H 0.07 1.96 6.51 -2.39 -0.02 1.95 16 17 C -0.10 -1.77 6.12 30.43 0.19 -1.58 16 18 C -0.12 -2.12 5.79 30.74 0.18 -1.95 16 19 C -0.11 -2.19 5.79 30.80 0.18 -2.02 16 20 C -0.10 -2.46 5.94 30.58 0.18 -2.28 16 21 C -0.11 -2.66 3.03 -13.33 -0.04 -2.70 16 22 H 0.10 2.10 8.01 -2.38 -0.02 2.08 16 23 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.34 12.26 7.03 -89.69 -0.63 11.63 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 2.01 8.12 -2.39 -0.02 1.99 16 31 H 0.07 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.52 7.87 -2.39 -0.02 1.50 16 Total: -1.00 -63.41 296.12 2.04 -61.37 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.37 Total: 16.23 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 2.37 Total: -39.37 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.73 Total: -85.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.41 2.04 -61.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712491988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.916 kcal (2) G-P(sol) polarization free energy of solvation -63.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds