Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99423 * 2 1 4 4 H 1.48511 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47330 * 300.00191 * 3 2 1 6 6 H 1.48504 * 109.47188 * 60.00799 * 3 2 1 7 7 C 1.37873 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00319 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.46897 * 110.99931 * 179.97438 * 11 10 9 13 13 H 1.09007 * 113.02344 * 27.17826 * 12 11 10 14 14 C 1.53963 * 113.75170 * 255.49875 * 12 11 10 15 15 C 1.54364 * 86.87102 * 219.14595 * 14 12 11 16 16 H 1.08998 * 114.01934 * 141.28173 * 15 14 12 17 17 C 1.53011 * 111.26630 * 270.70497 * 15 14 12 18 18 C 1.52949 * 109.21934 * 142.41980 * 17 15 14 19 19 C 1.52598 * 109.88273 * 298.18328 * 18 17 15 20 20 C 1.51631 * 111.07590 * 63.12299 * 19 18 17 21 21 C 1.50514 * 114.39424 * 313.09893 * 20 19 18 22 22 H 1.08998 * 111.19830 * 162.79324 * 21 20 19 23 23 H 0.96996 * 120.00691 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47186 * 60.00147 * 9 7 2 25 25 H 1.09000 * 109.47582 * 300.00229 * 9 7 2 26 26 H 1.09004 * 109.47063 * 60.00399 * 10 9 7 27 27 H 1.09002 * 109.47261 * 300.00006 * 10 9 7 28 28 H 1.00899 * 111.00313 * 303.95714 * 11 10 9 29 29 H 1.09002 * 113.66769 * 104.63033 * 14 12 11 30 30 H 1.09002 * 113.66213 * 333.65783 * 14 12 11 31 31 H 1.08994 * 109.51373 * 264.00021 * 17 15 14 32 32 H 1.08990 * 109.51676 * 24.16669 * 17 15 14 33 33 H 1.09006 * 109.51857 * 177.77272 * 18 17 15 34 34 H 1.08992 * 108.69252 * 58.08941 * 18 17 15 35 35 H 1.09003 * 109.16029 * 302.71407 * 19 18 17 36 36 H 1.09001 * 109.15931 * 183.53393 * 19 18 17 37 37 H 1.08997 * 108.49799 * 191.83104 * 20 19 18 38 38 H 1.08990 * 108.50210 * 74.37105 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 2.4355 -6.0758 -0.0005 13 1 3.3977 -5.8454 0.4570 14 6 2.5506 -6.7799 -1.3649 15 6 2.5950 -8.1086 -0.5804 16 1 2.0465 -8.9224 -1.0546 17 6 4.0307 -8.4867 -0.2102 18 6 4.0424 -9.1141 1.1847 19 6 3.5437 -8.1028 2.2128 20 6 2.1026 -7.7160 1.9426 21 6 1.8079 -7.3812 0.5051 22 1 0.7366 -7.4077 0.3059 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 0.8748 -4.9841 0.7816 29 1 3.4750 -6.5548 -1.8969 30 1 1.6643 -6.6703 -1.9899 31 1 4.4270 -9.1807 -0.9513 32 1 4.6484 -7.5891 -0.1837 33 1 5.0572 -9.4215 1.4373 34 1 3.3871 -9.9851 1.1814 35 1 4.1679 -7.2103 2.1686 36 1 3.6160 -8.5398 3.2087 37 1 1.8561 -6.8500 2.5569 38 1 1.4602 -8.5433 2.2438 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712491989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = -11.879412 kcal Electronic energy + Delta-G solvation = -15429.809783 eV Core-core repulsion = 13078.181498 eV Total energy + Delta-G solvation = -2351.628285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41645 -35.50635 -33.76894 -32.40449 -31.11204 -28.74359 -25.94042 -24.48687 -22.98960 -22.05116 -20.71744 -20.48022 -17.70038 -16.46082 -15.83320 -15.17610 -14.64873 -14.38526 -14.21265 -14.15710 -13.53536 -13.17359 -12.34142 -12.31401 -12.20338 -11.83043 -11.51114 -11.49340 -11.12509 -10.94092 -10.86187 -10.68322 -10.48538 -10.13026 -10.03687 -9.83129 -9.69276 -9.22513 -9.05954 -8.33304 -7.74272 -5.97507 -3.99876 3.32524 3.39726 3.43981 4.45389 4.52128 4.54279 4.68744 4.92212 4.98266 5.07488 5.13140 5.26063 5.38467 5.42470 5.52120 5.59903 5.68497 5.80494 5.88929 5.93389 6.03223 6.09531 6.13004 6.17921 6.25464 6.30879 6.37404 6.45397 6.65091 6.66797 7.03717 7.58728 7.77975 7.88202 8.03004 8.12945 8.47176 9.07751 9.63855 11.14028 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050647 B = 0.004892 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.710878 B = 5722.291264 C = 5757.463636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.680 5.680 12 C 0.064 3.936 13 H 0.065 0.935 14 C -0.126 4.126 15 C -0.104 4.104 16 H 0.074 0.926 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.102 4.102 22 H 0.089 0.911 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.335 0.665 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -17.881 2.006 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.310 5.310 12 C -0.047 4.047 13 H 0.083 0.917 14 C -0.164 4.164 15 C -0.123 4.123 16 H 0.093 0.907 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.121 4.121 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.867 -17.746 1.329 18.738 hybrid contribution 0.706 1.090 0.919 1.591 sum 6.572 -16.656 2.248 18.046 Atomic orbital electron populations 1.69981 1.06033 1.26439 1.50867 1.25001 0.94828 0.99197 0.95343 0.86544 0.80089 0.83832 0.77575 1.19780 1.20967 1.21035 1.21227 0.93006 0.91061 1.50593 0.92761 1.19080 0.94056 0.90541 0.97633 1.22170 0.96902 0.88708 0.98396 1.60728 1.19287 1.01985 1.49031 1.23029 0.95397 0.89667 0.96588 0.91740 1.23284 1.01970 0.94394 0.96745 1.22097 0.95823 0.96974 0.97441 0.90718 1.21392 0.95559 1.00734 0.96368 1.21347 1.00559 0.98399 0.95021 1.21113 0.96613 0.99127 0.98419 1.20591 0.96485 1.01141 0.96370 1.21935 1.00246 0.96295 0.93584 0.89299 0.93072 0.95691 0.96890 0.96872 0.92504 0.84698 0.92133 0.89568 0.91745 0.91971 0.92285 0.92251 0.92289 0.92217 0.92081 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.45 5.49 -3.82 -0.02 1.43 16 11 N -0.68 -12.54 6.55 -105.96 -0.69 -13.23 16 12 C 0.06 0.96 3.28 -67.00 -0.22 0.74 16 13 H 0.06 1.02 7.11 -51.93 -0.37 0.65 16 14 C -0.13 -1.72 7.28 -25.57 -0.19 -1.91 16 15 C -0.10 -1.19 4.26 -90.14 -0.38 -1.58 16 16 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.10 -1.05 5.47 -26.75 -0.15 -1.20 16 18 C -0.12 -1.09 5.84 -26.96 -0.16 -1.24 16 19 C -0.12 -1.18 5.73 -27.63 -0.16 -1.34 16 20 C -0.11 -1.22 5.48 -28.67 -0.16 -1.37 16 21 C -0.10 -1.27 3.30 -91.94 -0.30 -1.57 16 22 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.33 5.99 8.60 -39.29 -0.34 5.66 16 29 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.69 7.26 -51.93 -0.38 0.31 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -29.91 297.33 -9.73 -39.64 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.94 Total: 0.13 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.29 Total: -21.35 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.04 Total: -39.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.91 -9.73 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712491989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.764 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds