Wall clock time and date at job start Mon Mar 30 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99423 * 2 1 4 4 H 1.48511 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47330 * 300.00191 * 3 2 1 6 6 H 1.48504 * 109.47188 * 60.00799 * 3 2 1 7 7 C 1.37873 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00319 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.46897 * 110.99931 * 179.97438 * 11 10 9 13 13 H 1.09007 * 113.02344 * 27.17826 * 12 11 10 14 14 C 1.53963 * 113.75170 * 255.49875 * 12 11 10 15 15 C 1.54364 * 86.87102 * 219.14595 * 14 12 11 16 16 H 1.08998 * 114.01934 * 141.28173 * 15 14 12 17 17 C 1.53011 * 111.26630 * 270.70497 * 15 14 12 18 18 C 1.52949 * 109.21934 * 142.41980 * 17 15 14 19 19 C 1.52598 * 109.88273 * 298.18328 * 18 17 15 20 20 C 1.51631 * 111.07590 * 63.12299 * 19 18 17 21 21 C 1.50514 * 114.39424 * 313.09893 * 20 19 18 22 22 H 1.08998 * 111.19830 * 162.79324 * 21 20 19 23 23 H 0.96996 * 120.00691 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47186 * 60.00147 * 9 7 2 25 25 H 1.09000 * 109.47582 * 300.00229 * 9 7 2 26 26 H 1.09004 * 109.47063 * 60.00399 * 10 9 7 27 27 H 1.09002 * 109.47261 * 300.00006 * 10 9 7 28 28 H 1.00899 * 111.00313 * 303.95714 * 11 10 9 29 29 H 1.09002 * 113.66769 * 104.63033 * 14 12 11 30 30 H 1.09002 * 113.66213 * 333.65783 * 14 12 11 31 31 H 1.08994 * 109.51373 * 264.00021 * 17 15 14 32 32 H 1.08990 * 109.51676 * 24.16669 * 17 15 14 33 33 H 1.09006 * 109.51857 * 177.77272 * 18 17 15 34 34 H 1.08992 * 108.69252 * 58.08941 * 18 17 15 35 35 H 1.09003 * 109.16029 * 302.71407 * 19 18 17 36 36 H 1.09001 * 109.15931 * 183.53393 * 19 18 17 37 37 H 1.08997 * 108.49799 * 191.83104 * 20 19 18 38 38 H 1.08990 * 108.50210 * 74.37105 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 2.4355 -6.0758 -0.0005 13 1 3.3977 -5.8454 0.4570 14 6 2.5506 -6.7799 -1.3649 15 6 2.5950 -8.1086 -0.5804 16 1 2.0465 -8.9224 -1.0546 17 6 4.0307 -8.4867 -0.2102 18 6 4.0424 -9.1141 1.1847 19 6 3.5437 -8.1028 2.2128 20 6 2.1026 -7.7160 1.9426 21 6 1.8079 -7.3812 0.5051 22 1 0.7366 -7.4077 0.3059 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 0.8748 -4.9841 0.7816 29 1 3.4750 -6.5548 -1.8969 30 1 1.6643 -6.6703 -1.9899 31 1 4.4270 -9.1807 -0.9513 32 1 4.6484 -7.5891 -0.1837 33 1 5.0572 -9.4215 1.4373 34 1 3.3871 -9.9851 1.1814 35 1 4.1679 -7.2103 2.1686 36 1 3.6160 -8.5398 3.2087 37 1 1.8561 -6.8500 2.5569 38 1 1.4602 -8.5433 2.2438 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712491989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:14 Heat of formation + Delta-G solvation = -29.451082 kcal Electronic energy + Delta-G solvation = -15430.571748 eV Core-core repulsion = 13078.181498 eV Total energy + Delta-G solvation = -2352.390250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44973 -36.99986 -35.29367 -34.13516 -32.12165 -30.58815 -27.04381 -26.25785 -24.21063 -23.10692 -22.40599 -21.67413 -18.78323 -18.48321 -17.16233 -16.57189 -16.35435 -15.61791 -15.43801 -15.21678 -14.73448 -14.61397 -14.14815 -13.64163 -13.40431 -13.14864 -12.87358 -12.81103 -12.62047 -12.45913 -12.31214 -12.06381 -11.75334 -11.63751 -11.42936 -11.32972 -10.96777 -10.70242 -10.60055 -10.58612 -9.27452 -8.22011 -6.33978 1.39065 1.39871 1.53251 2.39385 3.11231 3.38833 3.55245 3.61194 3.86754 3.92656 4.15993 4.20582 4.35123 4.43762 4.52049 4.56683 4.62607 4.74277 4.78323 4.84389 5.00906 5.03638 5.05678 5.12640 5.18008 5.21487 5.25356 5.38016 5.40627 5.47450 5.59793 5.66291 5.68031 5.78757 6.14994 6.33464 6.54895 6.83142 7.35532 8.90473 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050647 B = 0.004892 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.710878 B = 5722.291264 C = 5757.463636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.685 5.685 12 C 0.053 3.947 13 H 0.060 0.940 14 C -0.129 4.129 15 C -0.089 4.089 16 H 0.090 0.910 17 C -0.103 4.103 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.093 4.093 22 H 0.084 0.916 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.009 1.009 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.336 0.664 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -18.900 2.253 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.315 5.315 12 C -0.057 4.057 13 H 0.078 0.922 14 C -0.167 4.167 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.112 4.112 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.201 -18.788 1.577 20.182 hybrid contribution 0.248 1.381 0.834 1.633 sum 7.449 -17.407 2.411 19.087 Atomic orbital electron populations 1.70112 1.07854 1.27810 1.51415 1.25984 0.95778 1.03408 0.94505 0.85353 0.78970 0.78510 0.77916 1.18639 1.20214 1.20147 1.21632 0.93465 0.92300 1.50998 0.92319 1.18928 0.94282 0.92371 0.94974 1.21767 0.95519 0.88780 0.98171 1.60679 1.19878 1.01672 1.49284 1.23195 0.94793 0.89370 0.98340 0.92223 1.23294 1.01524 0.95913 0.96002 1.22069 0.96753 0.96083 0.95907 0.89140 1.21422 0.94295 1.00752 0.97570 1.21334 1.01587 0.98181 0.93850 1.21130 0.95509 0.99021 0.99660 1.20591 0.97673 1.01207 0.95095 1.21891 0.99942 0.94492 0.94902 0.89817 0.92673 0.98798 0.99071 0.96754 0.92904 0.84569 0.92052 0.90644 0.90063 0.93181 0.90947 0.91235 0.93678 0.90850 0.93344 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C 0.09 3.88 5.49 86.30 0.47 4.35 16 11 N -0.68 -25.78 6.55 -489.14 -3.20 -28.98 16 12 C 0.05 1.58 3.28 45.38 0.15 1.73 16 13 H 0.06 1.87 7.11 -2.38 -0.02 1.85 16 14 C -0.13 -3.45 7.28 31.34 0.23 -3.23 16 15 C -0.09 -1.86 4.26 -10.48 -0.04 -1.90 16 16 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.10 -1.85 5.47 30.58 0.17 -1.68 16 18 C -0.11 -1.77 5.84 30.44 0.18 -1.59 16 19 C -0.12 -2.14 5.73 30.01 0.17 -1.97 16 20 C -0.11 -2.26 5.48 29.34 0.16 -2.10 16 21 C -0.09 -2.22 3.30 -11.65 -0.04 -2.26 16 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.01 0.63 8.13 -2.39 -0.02 0.61 16 27 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.34 12.37 8.60 -89.69 -0.77 11.60 16 29 H 0.06 1.61 8.00 -2.39 -0.02 1.59 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.03 7.26 -2.39 -0.02 1.01 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.95 7.85 -2.39 -0.02 0.94 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -64.37 297.33 1.64 -62.73 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.23 Total: 14.96 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 2.30 Total: -38.10 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.92 Total: -86.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.37 1.64 -62.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712491989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.282 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds