Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00206 * 2 1 4 4 H 1.48498 * 109.46923 * 239.99461 * 3 2 1 5 5 H 1.48494 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47010 * 119.99653 * 3 2 1 7 7 C 1.37880 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47686 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47359 * 179.97438 * 10 9 7 12 12 C 1.46906 * 111.00093 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46646 * 180.02562 * 13 12 11 15 15 H 1.08996 * 115.55031 * 29.33681 * 14 13 12 16 16 C 1.53001 * 117.49866 * 243.62195 * 14 13 12 17 17 C 1.53000 * 117.49497 * 174.99786 * 14 13 12 18 18 H 1.08999 * 117.50120 * 0.02562 * 17 14 13 19 19 C 1.52998 * 117.50089 * 215.00055 * 17 14 13 20 20 C 1.52995 * 117.49974 * 128.62357 * 19 17 14 21 21 C 1.53000 * 117.49398 * 60.00171 * 19 17 14 22 22 H 0.97003 * 119.99525 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47098 * 59.99761 * 9 7 2 24 24 H 1.09000 * 109.46860 * 300.00373 * 9 7 2 25 25 H 1.09003 * 109.46730 * 59.99924 * 10 9 7 26 26 H 1.08996 * 109.47094 * 300.00334 * 10 9 7 27 27 H 1.00900 * 110.99913 * 56.05013 * 11 10 9 28 28 H 1.09004 * 109.46292 * 60.00465 * 12 11 10 29 29 H 1.08990 * 109.47009 * 300.00615 * 12 11 10 30 30 H 1.08995 * 109.47505 * 60.00699 * 13 12 11 31 31 H 1.09000 * 109.47175 * 300.00215 * 13 12 11 32 32 H 1.08996 * 117.49555 * 359.97438 * 16 14 13 33 33 H 1.08995 * 117.49577 * 145.02406 * 16 14 13 34 34 H 1.08997 * 115.55068 * 274.33673 * 19 17 14 35 35 H 1.09001 * 117.49787 * 0.02562 * 20 19 17 36 36 H 1.08999 * 117.49889 * 145.02321 * 20 19 17 37 37 H 1.09007 * 117.50008 * 214.97841 * 21 19 17 38 38 H 1.08997 * 117.50544 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0006 13 6 1.6351 -7.3800 0.0006 14 6 2.5980 -8.5691 0.0006 15 1 3.5601 -8.3949 0.4824 16 6 2.5740 -9.4976 -1.2152 17 6 1.9919 -9.9689 0.1190 18 1 0.9072 -10.0428 0.1964 19 6 2.7826 -11.0171 0.9043 20 6 2.0435 -11.7819 2.0041 21 6 3.0813 -10.7207 2.3753 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.8741 -4.9846 -0.7800 28 1 3.0638 -6.0348 0.8902 29 1 3.0626 -6.0350 -0.8897 30 1 1.0069 -7.4209 -0.8892 31 1 1.0074 -7.4212 0.8908 32 1 1.8720 -9.2616 -2.0149 33 1 3.5205 -9.9343 -1.5336 34 1 3.5394 -11.5580 0.3362 35 1 0.9937 -11.5385 2.1679 36 1 2.3138 -12.8263 2.1597 37 1 4.0344 -11.0670 2.7752 38 1 2.7141 -9.7792 2.7837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712648645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = 23.214307 kcal Electronic energy + Delta-G solvation = -14366.303126 eV Core-core repulsion = 12016.196619 eV Total energy + Delta-G solvation = -2350.106507 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96839 -36.49281 -35.27621 -33.01505 -30.77970 -28.00571 -24.38169 -23.69282 -22.63854 -22.14796 -20.89732 -20.20889 -19.85141 -16.29066 -15.96320 -15.52595 -15.33439 -14.56254 -14.44121 -13.80874 -13.27942 -13.15132 -12.90726 -12.12124 -11.93289 -11.77015 -11.60137 -11.35908 -11.14441 -11.00208 -10.92908 -10.83880 -10.66935 -10.52682 -9.97842 -9.91119 -9.55913 -9.28873 -9.12364 -8.33016 -7.77277 -5.97663 -4.00276 3.34891 3.38740 3.39057 3.41587 3.81362 4.29916 4.46482 4.62134 4.65044 4.81000 4.94254 4.97730 5.15601 5.24093 5.38046 5.39110 5.42802 5.51071 5.64279 5.69131 5.73621 5.83619 5.91131 5.97740 6.04479 6.12407 6.26358 6.35932 6.41538 6.48588 7.01227 7.52264 7.75776 7.85993 8.00133 8.11544 8.46196 9.06880 9.63275 11.13818 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066246 B = 0.003383 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.566426 B = 8275.378597 C = 8328.017718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.062 3.938 13 C -0.087 4.087 14 C -0.137 4.137 15 H 0.104 0.896 16 C -0.174 4.174 17 C -0.125 4.125 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.179 4.179 21 C -0.177 4.177 22 H 0.261 0.739 23 H 0.013 0.987 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.335 0.665 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -21.402 0.494 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.155 4.155 15 H 0.122 0.878 16 C -0.211 4.211 17 C -0.143 4.143 18 H 0.122 0.878 19 C -0.142 4.142 20 C -0.216 4.216 21 C -0.214 4.214 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.152 0.848 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.589 -21.275 1.183 21.797 hybrid contribution 0.830 0.934 -0.948 1.569 sum 5.418 -20.341 0.235 21.051 Atomic orbital electron populations 1.69966 1.06039 1.26688 1.50612 1.25008 0.94852 0.99213 0.95307 0.86640 0.79559 0.83089 0.78593 1.20299 1.21258 1.20206 1.21157 0.92963 0.91072 1.50951 0.92814 1.19066 0.94034 0.90443 0.97685 1.22150 0.96966 0.88564 0.98578 1.60599 1.19935 1.02262 1.49653 1.21891 0.94688 0.90251 0.99979 1.21175 0.96929 0.91973 1.02403 1.22419 1.00925 0.90421 1.01778 0.87763 1.23153 1.02513 1.04001 0.91402 1.21849 0.98507 0.94677 0.99244 0.87755 1.21742 1.01804 1.00250 0.90408 1.22972 0.98046 0.97058 1.03482 1.22981 1.00174 1.00688 0.97564 0.92936 0.96846 0.95658 0.92421 0.96735 0.84834 0.91554 0.95969 0.92115 0.90842 0.88797 0.89072 0.87963 0.88734 0.89030 0.89023 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.41 16 11 N -0.69 -12.86 6.50 -113.78 -0.74 -13.60 16 12 C 0.06 0.92 5.64 -3.82 -0.02 0.90 16 13 C -0.09 -1.08 5.76 -26.73 -0.15 -1.23 16 14 C -0.14 -1.45 5.38 -90.62 -0.49 -1.94 16 15 H 0.10 1.13 8.07 -51.93 -0.42 0.71 16 16 C -0.17 -1.65 9.90 -26.73 -0.26 -1.92 16 17 C -0.12 -1.19 5.59 -90.62 -0.51 -1.70 16 18 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.12 -1.08 5.87 -90.62 -0.53 -1.61 16 20 C -0.18 -1.42 10.25 -26.73 -0.27 -1.70 16 21 C -0.18 -1.51 10.18 -26.73 -0.27 -1.78 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.33 5.95 8.73 -39.29 -0.34 5.61 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -30.09 317.38 -10.38 -40.47 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.05 Total: 0.95 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.09 Total: -22.92 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.00 Total: -40.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.09 -10.38 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.687 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds