Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00206 * 2 1 4 4 H 1.48498 * 109.46923 * 239.99461 * 3 2 1 5 5 H 1.48494 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47010 * 119.99653 * 3 2 1 7 7 C 1.37880 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47686 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47359 * 179.97438 * 10 9 7 12 12 C 1.46906 * 111.00093 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46646 * 180.02562 * 13 12 11 15 15 H 1.08996 * 115.55031 * 29.33681 * 14 13 12 16 16 C 1.53001 * 117.49866 * 243.62195 * 14 13 12 17 17 C 1.53000 * 117.49497 * 174.99786 * 14 13 12 18 18 H 1.08999 * 117.50120 * 0.02562 * 17 14 13 19 19 C 1.52998 * 117.50089 * 215.00055 * 17 14 13 20 20 C 1.52995 * 117.49974 * 128.62357 * 19 17 14 21 21 C 1.53000 * 117.49398 * 60.00171 * 19 17 14 22 22 H 0.97003 * 119.99525 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47098 * 59.99761 * 9 7 2 24 24 H 1.09000 * 109.46860 * 300.00373 * 9 7 2 25 25 H 1.09003 * 109.46730 * 59.99924 * 10 9 7 26 26 H 1.08996 * 109.47094 * 300.00334 * 10 9 7 27 27 H 1.00900 * 110.99913 * 56.05013 * 11 10 9 28 28 H 1.09004 * 109.46292 * 60.00465 * 12 11 10 29 29 H 1.08990 * 109.47009 * 300.00615 * 12 11 10 30 30 H 1.08995 * 109.47505 * 60.00699 * 13 12 11 31 31 H 1.09000 * 109.47175 * 300.00215 * 13 12 11 32 32 H 1.08996 * 117.49555 * 359.97438 * 16 14 13 33 33 H 1.08995 * 117.49577 * 145.02406 * 16 14 13 34 34 H 1.08997 * 115.55068 * 274.33673 * 19 17 14 35 35 H 1.09001 * 117.49787 * 0.02562 * 20 19 17 36 36 H 1.08999 * 117.49889 * 145.02321 * 20 19 17 37 37 H 1.09007 * 117.50008 * 214.97841 * 21 19 17 38 38 H 1.08997 * 117.50544 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0006 13 6 1.6351 -7.3800 0.0006 14 6 2.5980 -8.5691 0.0006 15 1 3.5601 -8.3949 0.4824 16 6 2.5740 -9.4976 -1.2152 17 6 1.9919 -9.9689 0.1190 18 1 0.9072 -10.0428 0.1964 19 6 2.7826 -11.0171 0.9043 20 6 2.0435 -11.7819 2.0041 21 6 3.0813 -10.7207 2.3753 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.8741 -4.9846 -0.7800 28 1 3.0638 -6.0348 0.8902 29 1 3.0626 -6.0350 -0.8897 30 1 1.0069 -7.4209 -0.8892 31 1 1.0074 -7.4212 0.8908 32 1 1.8720 -9.2616 -2.0149 33 1 3.5205 -9.9343 -1.5336 34 1 3.5394 -11.5580 0.3362 35 1 0.9937 -11.5385 2.1679 36 1 2.3138 -12.8263 2.1597 37 1 4.0344 -11.0670 2.7752 38 1 2.7141 -9.7792 2.7837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712648645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = 6.579063 kcal Electronic energy + Delta-G solvation = -14367.024484 eV Core-core repulsion = 12016.196619 eV Total energy + Delta-G solvation = -2350.827866 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74629 -37.78522 -36.34411 -35.02707 -32.41989 -29.65282 -26.18444 -24.55440 -23.45637 -23.21323 -22.56078 -21.35015 -20.64096 -18.50885 -16.96864 -16.67838 -16.49349 -16.17695 -15.62107 -15.00626 -14.86695 -14.58435 -13.97933 -13.83376 -13.26776 -13.14918 -12.77975 -12.52957 -12.42431 -12.30808 -12.25278 -12.04868 -11.91756 -11.69829 -11.41889 -11.40213 -11.24487 -10.67446 -10.56784 -10.26433 -9.30060 -8.21027 -6.33075 1.40039 1.43707 1.51726 2.40231 2.66006 3.09858 3.12114 3.29855 3.72727 3.88162 3.94667 4.14227 4.19518 4.29478 4.35901 4.46547 4.49548 4.60083 4.62568 4.69186 4.78576 4.81959 4.96202 5.04624 5.05110 5.07771 5.22164 5.28488 5.29255 5.34534 5.43100 5.46918 5.65815 5.77509 6.13026 6.27072 6.53936 6.83973 7.36270 8.91091 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066246 B = 0.003383 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.566426 B = 8275.378597 C = 8328.017718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.701 5.701 12 C 0.064 3.936 13 C -0.077 4.077 14 C -0.146 4.146 15 H 0.103 0.897 16 C -0.167 4.167 17 C -0.120 4.120 18 H 0.102 0.898 19 C -0.130 4.130 20 C -0.175 4.175 21 C -0.183 4.183 22 H 0.265 0.735 23 H -0.008 1.008 24 H -0.006 1.006 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -22.059 0.252 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.332 5.332 12 C -0.065 4.065 13 C -0.114 4.114 14 C -0.165 4.165 15 H 0.121 0.879 16 C -0.204 4.204 17 C -0.138 4.138 18 H 0.120 0.880 19 C -0.148 4.148 20 C -0.212 4.212 21 C -0.220 4.220 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.897 -21.958 0.941 22.756 hybrid contribution 0.382 1.086 -0.865 1.440 sum 6.279 -20.872 0.076 21.796 Atomic orbital electron populations 1.70105 1.07871 1.27946 1.51270 1.26008 0.95805 1.03472 0.94521 0.85448 0.78236 0.77801 0.79239 1.19067 1.20691 1.19109 1.21603 0.93574 0.92294 1.51201 0.92115 1.18922 0.94309 0.92323 0.95042 1.21781 0.95621 0.88516 0.98680 1.60519 1.20569 1.02020 1.50090 1.21947 0.94448 0.89903 1.00163 1.21041 0.96882 0.91341 1.02170 1.22288 1.00563 0.90283 1.03321 0.87891 1.23224 1.03050 1.02954 0.91160 1.21874 0.98533 0.93999 0.99433 0.87981 1.21790 1.02182 1.00324 0.90476 1.23051 0.97854 0.97652 1.02595 1.23004 1.00894 1.00563 0.97501 0.92667 0.99010 0.98783 0.92493 0.96320 0.84415 0.91632 0.95366 0.91741 0.91709 0.88529 0.88012 0.87124 0.88897 0.87666 0.88055 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.73 5.23 29.85 0.16 1.89 16 10 C 0.08 3.64 5.62 86.30 0.49 4.12 16 11 N -0.70 -25.89 6.50 -513.90 -3.34 -29.23 16 12 C 0.06 1.87 5.64 86.30 0.49 2.36 16 13 C -0.08 -1.82 5.76 30.60 0.18 -1.65 16 14 C -0.15 -2.90 5.38 -10.79 -0.06 -2.96 16 15 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 16 C -0.17 -2.85 9.90 30.60 0.30 -2.55 16 17 C -0.12 -2.12 5.59 -10.79 -0.06 -2.18 16 18 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.13 -2.03 5.87 -10.80 -0.06 -2.10 16 20 C -0.17 -2.49 10.25 30.59 0.31 -2.18 16 21 C -0.18 -2.87 10.18 30.59 0.31 -2.56 16 22 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.34 12.05 8.73 -89.69 -0.78 11.27 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.48 7.88 -2.39 -0.02 1.46 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 1.61 8.03 -2.39 -0.02 1.59 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.87 317.38 1.93 -61.94 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.22 Total: 17.19 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 2.75 Total: -39.15 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.06 Total: -86.76 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.87 1.93 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.517 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds