Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47068 * 239.99852 * 3 2 1 5 5 H 1.48500 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47061 * 119.99923 * 3 2 1 7 7 C 1.37878 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00316 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47320 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46961 * 179.97438 * 13 12 11 15 15 H 1.08998 * 115.56242 * 330.68967 * 14 13 12 16 16 C 1.52999 * 117.49678 * 116.37935 * 14 13 12 17 17 C 1.53000 * 117.49496 * 185.00095 * 14 13 12 18 18 H 1.09000 * 117.52282 * 359.97438 * 17 14 13 19 19 C 1.53006 * 117.49504 * 145.02020 * 17 14 13 20 20 C 1.53001 * 117.49866 * 248.63253 * 19 17 14 21 21 C 1.53000 * 117.49497 * 180.02562 * 19 17 14 22 22 H 0.97002 * 119.99673 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47644 * 59.99694 * 9 7 2 24 24 H 1.09005 * 109.46729 * 299.99385 * 9 7 2 25 25 H 1.09007 * 109.47083 * 59.99552 * 10 9 7 26 26 H 1.08994 * 109.46902 * 299.99917 * 10 9 7 27 27 H 1.00905 * 110.99706 * 303.95368 * 11 10 9 28 28 H 1.09000 * 109.47185 * 59.99220 * 12 11 10 29 29 H 1.08998 * 109.46980 * 300.00102 * 12 11 10 30 30 H 1.08999 * 109.47138 * 60.00303 * 13 12 11 31 31 H 1.09002 * 109.47259 * 299.99587 * 13 12 11 32 32 H 1.08995 * 117.50154 * 359.97438 * 16 14 13 33 33 H 1.09002 * 117.49417 * 214.97701 * 16 14 13 34 34 H 1.08996 * 115.55031 * 34.34738 * 19 17 14 35 35 H 1.08996 * 117.49555 * 359.97438 * 20 19 17 36 36 H 1.08995 * 117.49577 * 145.02406 * 20 19 17 37 37 H 1.08998 * 117.49694 * 214.97781 * 21 19 17 38 38 H 1.08998 * 117.50118 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0031 14 6 2.5980 -8.5691 0.0031 15 1 3.5599 -8.3953 -0.4790 16 6 2.5747 -9.4969 1.2194 17 6 1.9917 -9.9690 -0.1140 18 1 0.9069 -10.0433 -0.1907 19 6 2.7823 -11.0177 -0.8990 20 6 2.1994 -11.4896 -2.2326 21 6 2.1757 -12.4174 -1.0166 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5566 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8746 -4.9841 0.7828 28 1 3.0632 -6.0344 0.8917 29 1 3.0632 -6.0354 -0.8882 30 1 1.0069 -7.4218 -0.8867 31 1 1.0074 -7.4204 0.8933 32 1 1.8738 -9.2600 2.0198 33 1 3.5215 -9.9334 1.5375 34 1 3.8670 -10.9441 -0.8213 35 1 1.2526 -11.0532 -2.5505 36 1 2.9007 -11.7263 -3.0327 37 1 2.8615 -13.2647 -1.0166 38 1 1.2138 -12.5913 -0.5345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712648648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = 22.588337 kcal Electronic energy + Delta-G solvation = -14287.063411 eV Core-core repulsion = 11936.929760 eV Total energy + Delta-G solvation = -2350.133651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.91210 -36.55156 -35.34983 -33.01509 -30.77150 -27.98798 -24.32708 -23.74278 -22.61866 -22.07617 -20.86274 -20.21784 -20.07874 -16.30516 -15.94920 -15.54948 -15.36856 -14.49688 -14.29817 -13.83012 -13.26365 -13.14540 -12.92580 -12.12846 -11.97770 -11.78213 -11.53009 -11.40033 -11.27033 -11.09126 -10.95457 -10.87823 -10.70997 -10.52983 -9.98110 -9.83099 -9.53486 -9.26991 -9.11828 -8.32862 -7.76950 -5.97546 -4.00156 3.30245 3.34959 3.39055 3.41607 3.98727 4.18833 4.46216 4.62263 4.64495 4.80858 4.93616 5.03684 5.07695 5.16536 5.36594 5.38139 5.39620 5.51291 5.63072 5.66095 5.74109 5.84406 5.87280 5.93109 6.06472 6.12609 6.26823 6.35817 6.41435 6.48847 7.01376 7.52491 7.75969 7.86221 8.00362 8.11702 8.46313 9.07018 9.63369 11.13934 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.078120 B = 0.003241 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.335610 B = 8638.418488 C = 8663.844373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.062 3.938 13 C -0.087 4.087 14 C -0.137 4.137 15 H 0.104 0.896 16 C -0.174 4.174 17 C -0.123 4.123 18 H 0.103 0.897 19 C -0.121 4.121 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.057 0.943 27 H 0.335 0.665 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -21.862 -0.117 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.325 5.325 12 C -0.068 4.068 13 C -0.124 4.124 14 C -0.156 4.156 15 H 0.122 0.878 16 C -0.211 4.211 17 C -0.141 4.141 18 H 0.121 0.879 19 C -0.139 4.139 20 C -0.215 4.215 21 C -0.217 4.217 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.344 -21.737 -0.805 22.182 hybrid contribution 0.834 0.944 0.937 1.570 sum 5.178 -20.793 0.132 21.429 Atomic orbital electron populations 1.69969 1.06036 1.26687 1.50622 1.25010 0.94857 0.99219 0.95315 0.86639 0.79554 0.83083 0.78591 1.20210 1.21262 1.20298 1.21155 0.92962 0.91071 1.50933 0.92813 1.19068 0.94036 0.90443 0.97690 1.22151 0.96962 0.88559 0.98576 1.60592 1.19978 1.02268 1.49621 1.21892 0.94689 0.90251 0.99984 1.21165 0.96923 0.91921 1.02426 1.22390 1.00946 0.90470 1.01769 0.87822 1.23114 1.02680 1.03905 0.91436 1.21825 0.98434 0.94684 0.99163 0.87881 1.21725 0.98456 0.94560 0.99186 1.22938 1.03187 1.03869 0.91462 1.22933 1.02838 0.93372 1.02576 0.92938 0.95662 0.96833 0.96748 0.92410 0.84830 0.95975 0.91537 0.90778 0.92118 0.88767 0.89054 0.87978 0.88619 0.88865 0.88976 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.42 16 11 N -0.69 -12.88 6.50 -113.79 -0.74 -13.62 16 12 C 0.06 0.92 5.64 -3.83 -0.02 0.90 16 13 C -0.09 -1.07 5.76 -26.73 -0.15 -1.23 16 14 C -0.14 -1.46 5.46 -90.62 -0.49 -1.95 16 15 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 16 C -0.17 -1.66 9.90 -26.73 -0.26 -1.93 16 17 C -0.12 -1.18 5.57 -90.62 -0.50 -1.68 16 18 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.12 -1.06 5.85 -90.62 -0.53 -1.59 16 20 C -0.18 -1.45 10.25 -26.74 -0.27 -1.72 16 21 C -0.18 -1.38 10.25 -26.74 -0.27 -1.66 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.33 5.96 8.73 -39.29 -0.34 5.62 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 32 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -30.15 317.49 -10.38 -40.53 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.05 Total: 0.80 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.10 Total: -22.81 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.00 Total: -40.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.15 -10.38 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.123 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds