Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47068 * 239.99852 * 3 2 1 5 5 H 1.48500 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47061 * 119.99923 * 3 2 1 7 7 C 1.37878 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00316 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47320 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46961 * 179.97438 * 13 12 11 15 15 H 1.08998 * 115.56242 * 330.68967 * 14 13 12 16 16 C 1.52999 * 117.49678 * 116.37935 * 14 13 12 17 17 C 1.53000 * 117.49496 * 185.00095 * 14 13 12 18 18 H 1.09000 * 117.52282 * 359.97438 * 17 14 13 19 19 C 1.53006 * 117.49504 * 145.02020 * 17 14 13 20 20 C 1.53001 * 117.49866 * 248.63253 * 19 17 14 21 21 C 1.53000 * 117.49497 * 180.02562 * 19 17 14 22 22 H 0.97002 * 119.99673 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47644 * 59.99694 * 9 7 2 24 24 H 1.09005 * 109.46729 * 299.99385 * 9 7 2 25 25 H 1.09007 * 109.47083 * 59.99552 * 10 9 7 26 26 H 1.08994 * 109.46902 * 299.99917 * 10 9 7 27 27 H 1.00905 * 110.99706 * 303.95368 * 11 10 9 28 28 H 1.09000 * 109.47185 * 59.99220 * 12 11 10 29 29 H 1.08998 * 109.46980 * 300.00102 * 12 11 10 30 30 H 1.08999 * 109.47138 * 60.00303 * 13 12 11 31 31 H 1.09002 * 109.47259 * 299.99587 * 13 12 11 32 32 H 1.08995 * 117.50154 * 359.97438 * 16 14 13 33 33 H 1.09002 * 117.49417 * 214.97701 * 16 14 13 34 34 H 1.08996 * 115.55031 * 34.34738 * 19 17 14 35 35 H 1.08996 * 117.49555 * 359.97438 * 20 19 17 36 36 H 1.08995 * 117.49577 * 145.02406 * 20 19 17 37 37 H 1.08998 * 117.49694 * 214.97781 * 21 19 17 38 38 H 1.08998 * 117.50118 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0031 14 6 2.5980 -8.5691 0.0031 15 1 3.5599 -8.3953 -0.4790 16 6 2.5747 -9.4969 1.2194 17 6 1.9917 -9.9690 -0.1140 18 1 0.9069 -10.0433 -0.1907 19 6 2.7823 -11.0177 -0.8990 20 6 2.1994 -11.4896 -2.2326 21 6 2.1757 -12.4174 -1.0166 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5566 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8746 -4.9841 0.7828 28 1 3.0632 -6.0344 0.8917 29 1 3.0632 -6.0354 -0.8882 30 1 1.0069 -7.4218 -0.8867 31 1 1.0074 -7.4204 0.8933 32 1 1.8738 -9.2600 2.0198 33 1 3.5215 -9.9334 1.5375 34 1 3.8670 -10.9441 -0.8213 35 1 1.2526 -11.0532 -2.5505 36 1 2.9007 -11.7263 -3.0327 37 1 2.8615 -13.2647 -1.0166 38 1 1.2138 -12.5913 -0.5345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712648648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = 5.911975 kcal Electronic energy + Delta-G solvation = -14287.786553 eV Core-core repulsion = 11936.929760 eV Total energy + Delta-G solvation = -2350.856793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68586 -37.80005 -36.43832 -35.03333 -32.41524 -29.63659 -26.16265 -24.53887 -23.48773 -23.09163 -22.56148 -21.23244 -20.93859 -18.51064 -16.98413 -16.63690 -16.51151 -16.25550 -15.45108 -15.02436 -14.86563 -14.46932 -13.96561 -13.86046 -13.26773 -13.14965 -12.78346 -12.55469 -12.39516 -12.29938 -12.27156 -12.05053 -11.96296 -11.88709 -11.44974 -11.41487 -11.24666 -10.63691 -10.56532 -10.17574 -9.29710 -8.20933 -6.32962 1.40097 1.43766 1.51773 2.40320 2.59366 3.12180 3.25320 3.27818 3.65637 3.91506 3.93455 4.15056 4.18920 4.35168 4.36064 4.42707 4.48239 4.50530 4.62391 4.69526 4.78209 4.81609 4.96846 5.04757 5.04843 5.07599 5.22440 5.25716 5.28540 5.36913 5.43163 5.46209 5.66041 5.77670 6.13193 6.27308 6.54203 6.84112 7.36350 8.91186 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.078120 B = 0.003241 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.335610 B = 8638.418488 C = 8663.844373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.701 5.701 12 C 0.064 3.936 13 C -0.076 4.076 14 C -0.147 4.147 15 H 0.104 0.896 16 C -0.168 4.168 17 C -0.118 4.118 18 H 0.101 0.899 19 C -0.132 4.132 20 C -0.183 4.183 21 C -0.173 4.173 22 H 0.265 0.735 23 H -0.006 1.006 24 H -0.008 1.008 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.338 0.662 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -22.495 0.108 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.332 5.332 12 C -0.065 4.065 13 C -0.114 4.114 14 C -0.165 4.165 15 H 0.122 0.878 16 C -0.205 4.205 17 C -0.136 4.136 18 H 0.119 0.881 19 C -0.150 4.150 20 C -0.220 4.220 21 C -0.210 4.210 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.010 0.990 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.644 -22.396 -0.579 23.104 hybrid contribution 0.389 1.084 0.860 1.437 sum 6.032 -21.313 0.281 22.152 Atomic orbital electron populations 1.70108 1.07870 1.27944 1.51289 1.26011 0.95810 1.03484 0.94534 0.85446 0.78229 0.77792 0.79239 1.19110 1.20702 1.19063 1.21601 0.93573 0.92287 1.51170 0.92109 1.18926 0.94314 0.92327 0.95047 1.21780 0.95614 0.88504 0.98683 1.60512 1.20621 1.02033 1.50063 1.21950 0.94451 0.89890 1.00189 1.21033 0.96880 0.91302 1.02191 1.22277 1.00664 0.90325 1.03284 0.87788 1.23176 1.03174 1.02926 0.91216 1.21840 0.98433 0.94017 0.99306 0.88114 1.21756 0.98578 0.95076 0.99606 1.23003 1.03172 1.04085 0.91694 1.23005 1.03045 0.93137 1.01785 0.92671 0.98787 0.98997 0.96329 0.92477 0.84409 0.95344 0.91599 0.91653 0.91746 0.88532 0.88091 0.87666 0.89050 0.88085 0.87778 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.08 3.64 5.62 86.30 0.49 4.13 16 11 N -0.70 -25.92 6.50 -513.91 -3.34 -29.26 16 12 C 0.06 1.86 5.64 86.30 0.49 2.35 16 13 C -0.08 -1.82 5.76 30.60 0.18 -1.64 16 14 C -0.15 -2.93 5.46 -10.79 -0.06 -2.98 16 15 H 0.10 2.08 8.07 -2.39 -0.02 2.06 16 16 C -0.17 -2.90 9.90 30.59 0.30 -2.60 16 17 C -0.12 -2.09 5.57 -10.79 -0.06 -2.15 16 18 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.13 -2.09 5.85 -10.79 -0.06 -2.16 16 20 C -0.18 -2.72 10.25 30.59 0.31 -2.40 16 21 C -0.17 -2.33 10.25 30.59 0.31 -2.02 16 22 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 23 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 25 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 27 H 0.34 12.05 8.73 -89.69 -0.78 11.27 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.48 7.88 -2.39 -0.02 1.46 16 32 H 0.10 1.62 8.03 -2.39 -0.02 1.61 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -63.93 317.49 1.93 -62.00 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.22 Total: 16.95 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 2.75 Total: -38.94 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -3.06 Total: -86.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.93 1.93 -62.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.913 kcal (2) G-P(sol) polarization free energy of solvation -63.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds