Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48506 * 109.46853 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.46913 * 29.99503 * 3 2 1 6 6 H 1.48497 * 109.47510 * 149.99767 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47032 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99854 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47077 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 H 1.09006 * 115.54444 * 330.66573 * 14 13 12 16 16 C 1.52996 * 117.51944 * 116.36512 * 14 13 12 17 17 C 1.52995 * 117.50119 * 185.00035 * 14 13 12 18 18 H 1.08999 * 117.50168 * 144.97722 * 17 14 13 19 19 C 1.53001 * 117.49963 * 359.97006 * 17 14 13 20 20 C 1.53000 * 117.50223 * 180.02562 * 19 17 14 21 21 C 1.52997 * 117.49889 * 111.37740 * 19 17 14 22 22 H 0.96998 * 119.99653 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47022 * 59.99232 * 9 7 2 24 24 H 1.08999 * 109.46763 * 299.99951 * 9 7 2 25 25 H 1.09000 * 109.47138 * 60.00187 * 10 9 7 26 26 H 1.09006 * 109.47207 * 299.99755 * 10 9 7 27 27 H 1.00901 * 111.00448 * 56.04462 * 11 10 9 28 28 H 1.08998 * 109.47403 * 59.99654 * 12 11 10 29 29 H 1.08999 * 109.46972 * 299.99603 * 12 11 10 30 30 H 1.08998 * 109.47439 * 59.99490 * 13 12 11 31 31 H 1.08999 * 109.46743 * 299.99557 * 13 12 11 32 32 H 1.08999 * 117.49767 * 359.97438 * 16 14 13 33 33 H 1.08997 * 117.49766 * 214.97130 * 16 14 13 34 34 H 1.09002 * 115.55911 * 325.69168 * 19 17 14 35 35 H 1.08990 * 117.49990 * 145.01974 * 20 19 17 36 36 H 1.09004 * 117.49237 * 359.97438 * 20 19 17 37 37 H 1.08999 * 117.49685 * 0.02562 * 21 19 17 38 38 H 1.08997 * 117.50044 * 214.98097 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 -0.0008 14 6 2.5982 -8.5691 -0.0008 15 1 3.5607 -8.3945 -0.4819 16 6 2.5740 -9.4984 1.2143 17 6 1.9923 -9.9688 -0.1203 18 1 2.5559 -10.7151 -0.6802 19 6 0.4697 -10.0725 -0.2300 20 6 -0.1364 -11.4723 -0.3489 21 6 -0.1120 -10.5429 -1.5646 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6042 0.8905 26 1 2.8721 -3.6043 -0.8895 27 1 0.8747 -4.9841 -0.7817 28 1 3.0628 -6.0349 0.8909 29 1 3.0640 -6.0348 -0.8890 30 1 1.0083 -7.4207 -0.8914 31 1 1.0065 -7.4213 0.8885 32 1 1.8722 -9.2625 2.0143 33 1 3.5204 -9.9353 1.5327 34 1 -0.0940 -9.3261 0.3296 35 1 -1.0987 -11.6466 0.1321 36 1 0.5497 -12.3193 -0.3495 37 1 0.5900 -10.7788 -2.3644 38 1 -1.0585 -10.1060 -1.8830 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712648651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = 23.661417 kcal Electronic energy + Delta-G solvation = -14469.259649 eV Core-core repulsion = 12119.172529 eV Total energy + Delta-G solvation = -2350.087119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00367 -36.40302 -35.30469 -33.01739 -30.76085 -27.94932 -24.21801 -23.92290 -22.57401 -21.99456 -21.26666 -20.51115 -19.11914 -16.32332 -16.09758 -15.62501 -15.19086 -14.48850 -14.14516 -13.87083 -13.58523 -12.99225 -12.91327 -12.11646 -11.88897 -11.70230 -11.61293 -11.43605 -11.16773 -10.97533 -10.94579 -10.87719 -10.62837 -10.49914 -9.96863 -9.78197 -9.52505 -9.28099 -9.10705 -8.33083 -7.76276 -5.97601 -4.00093 3.33448 3.34352 3.39460 3.43137 4.02539 4.31033 4.43326 4.54140 4.72210 4.80238 5.06748 5.09578 5.13403 5.18583 5.33668 5.38234 5.45038 5.49942 5.67488 5.71373 5.76481 5.90827 5.92771 5.97460 6.06586 6.14851 6.28681 6.36659 6.42584 6.49920 7.01756 7.53145 7.76414 7.86591 8.01063 8.11942 8.46487 9.07266 9.63517 11.13908 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058915 B = 0.003618 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.144991 B = 7737.573091 C = 8042.800881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.061 3.939 13 C -0.084 4.084 14 C -0.139 4.139 15 H 0.102 0.898 16 C -0.172 4.172 17 C -0.123 4.123 18 H 0.100 0.900 19 C -0.119 4.119 20 C -0.181 4.181 21 C -0.178 4.178 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.335 0.665 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 -21.031 -1.069 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.325 5.325 12 C -0.069 4.069 13 C -0.122 4.122 14 C -0.158 4.158 15 H 0.120 0.880 16 C -0.209 4.209 17 C -0.142 4.142 18 H 0.118 0.882 19 C -0.138 4.138 20 C -0.218 4.218 21 C -0.215 4.215 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.152 0.848 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.309 -20.909 -0.374 21.039 hybrid contribution 0.833 0.947 -0.951 1.580 sum 3.143 -19.962 -1.325 20.251 Atomic orbital electron populations 1.69976 1.06033 1.26563 1.50723 1.25010 0.94852 0.99221 0.95331 0.86583 0.79844 0.83448 0.78046 1.20712 1.21183 1.19878 1.21193 0.92994 0.91060 1.50784 0.92769 1.19074 0.94046 0.90467 0.97693 1.22149 0.96953 0.88574 0.98561 1.60573 1.19992 1.02249 1.49641 1.21908 0.94694 0.90364 0.99916 1.21131 0.96906 0.91709 1.02433 1.22379 1.00588 0.90770 1.02062 0.87964 1.23101 1.02386 1.03831 0.91615 1.21798 0.93137 0.98044 1.01188 0.88239 1.21723 0.93431 0.97732 1.00867 1.22939 1.02442 0.93788 1.02647 1.22933 1.02768 1.04083 0.91708 0.93003 0.96837 0.95649 0.92419 0.96770 0.84812 0.91513 0.96123 0.91735 0.91102 0.88588 0.89047 0.87434 0.88898 0.89009 0.88918 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.42 16 11 N -0.69 -12.87 6.50 -113.78 -0.74 -13.61 16 12 C 0.06 0.91 5.64 -3.82 -0.02 0.89 16 13 C -0.08 -1.04 4.56 -26.73 -0.12 -1.17 16 14 C -0.14 -1.48 5.73 -90.62 -0.52 -2.00 16 15 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 16 C -0.17 -1.66 9.90 -26.73 -0.26 -1.93 16 17 C -0.12 -1.18 5.85 -90.62 -0.53 -1.71 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.12 -1.14 5.10 -90.62 -0.46 -1.60 16 20 C -0.18 -1.50 10.25 -26.71 -0.27 -1.77 16 21 C -0.18 -1.55 10.25 -26.71 -0.27 -1.83 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.33 5.97 8.73 -39.29 -0.34 5.63 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 31 H 0.07 0.92 7.62 -51.93 -0.40 0.53 16 32 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.10 7.35 -51.93 -0.38 0.72 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -30.13 314.95 -10.31 -40.44 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.99 Total: 1.14 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.05 Total: -23.04 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.00 Total: -40.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.13 -10.31 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.101 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds