Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48506 * 109.46853 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.46913 * 29.99503 * 3 2 1 6 6 H 1.48497 * 109.47510 * 149.99767 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47032 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99854 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47077 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 H 1.09006 * 115.54444 * 330.66573 * 14 13 12 16 16 C 1.52996 * 117.51944 * 116.36512 * 14 13 12 17 17 C 1.52995 * 117.50119 * 185.00035 * 14 13 12 18 18 H 1.08999 * 117.50168 * 144.97722 * 17 14 13 19 19 C 1.53001 * 117.49963 * 359.97006 * 17 14 13 20 20 C 1.53000 * 117.50223 * 180.02562 * 19 17 14 21 21 C 1.52997 * 117.49889 * 111.37740 * 19 17 14 22 22 H 0.96998 * 119.99653 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47022 * 59.99232 * 9 7 2 24 24 H 1.08999 * 109.46763 * 299.99951 * 9 7 2 25 25 H 1.09000 * 109.47138 * 60.00187 * 10 9 7 26 26 H 1.09006 * 109.47207 * 299.99755 * 10 9 7 27 27 H 1.00901 * 111.00448 * 56.04462 * 11 10 9 28 28 H 1.08998 * 109.47403 * 59.99654 * 12 11 10 29 29 H 1.08999 * 109.46972 * 299.99603 * 12 11 10 30 30 H 1.08998 * 109.47439 * 59.99490 * 13 12 11 31 31 H 1.08999 * 109.46743 * 299.99557 * 13 12 11 32 32 H 1.08999 * 117.49767 * 359.97438 * 16 14 13 33 33 H 1.08997 * 117.49766 * 214.97130 * 16 14 13 34 34 H 1.09002 * 115.55911 * 325.69168 * 19 17 14 35 35 H 1.08990 * 117.49990 * 145.01974 * 20 19 17 36 36 H 1.09004 * 117.49237 * 359.97438 * 20 19 17 37 37 H 1.08999 * 117.49685 * 0.02562 * 21 19 17 38 38 H 1.08997 * 117.50044 * 214.98097 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 -0.0008 14 6 2.5982 -8.5691 -0.0008 15 1 3.5607 -8.3945 -0.4819 16 6 2.5740 -9.4984 1.2143 17 6 1.9923 -9.9688 -0.1203 18 1 2.5559 -10.7151 -0.6802 19 6 0.4697 -10.0725 -0.2300 20 6 -0.1364 -11.4723 -0.3489 21 6 -0.1120 -10.5429 -1.5646 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6042 0.8905 26 1 2.8721 -3.6043 -0.8895 27 1 0.8747 -4.9841 -0.7817 28 1 3.0628 -6.0349 0.8909 29 1 3.0640 -6.0348 -0.8890 30 1 1.0083 -7.4207 -0.8914 31 1 1.0065 -7.4213 0.8885 32 1 1.8722 -9.2625 2.0143 33 1 3.5204 -9.9353 1.5327 34 1 -0.0940 -9.3261 0.3296 35 1 -1.0987 -11.6466 0.1321 36 1 0.5497 -12.3193 -0.3495 37 1 0.5900 -10.7788 -2.3644 38 1 -1.0585 -10.1060 -1.8830 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712648651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = 6.892940 kcal Electronic energy + Delta-G solvation = -14469.986784 eV Core-core repulsion = 12119.172529 eV Total energy + Delta-G solvation = -2350.814255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80049 -37.72502 -36.34688 -35.03961 -32.41765 -29.60810 -26.12291 -24.66091 -23.47903 -23.05900 -22.55946 -21.95196 -19.97333 -18.51403 -17.18684 -16.58958 -16.49971 -16.21557 -15.37453 -15.11035 -14.84514 -14.52999 -14.20196 -13.69889 -13.25610 -13.05449 -12.77223 -12.59336 -12.45238 -12.36586 -12.26234 -12.01707 -11.92104 -11.77324 -11.40710 -11.38678 -11.22794 -10.60565 -10.56899 -10.19326 -9.29287 -8.21007 -6.32931 1.40110 1.42069 1.53352 2.40263 2.60712 3.12202 3.27752 3.31308 3.61015 3.91830 3.98840 4.12420 4.24613 4.31421 4.38823 4.43989 4.46704 4.53041 4.62028 4.69850 4.81645 4.86207 4.99713 5.03876 5.05334 5.08591 5.20343 5.26556 5.29082 5.41864 5.43263 5.46255 5.66085 5.77850 6.13458 6.27700 6.54522 6.84250 7.36440 8.91299 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058915 B = 0.003618 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.144991 B = 7737.573091 C = 8042.800881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.701 5.701 12 C 0.063 3.937 13 C -0.072 4.072 14 C -0.150 4.150 15 H 0.108 0.892 16 C -0.170 4.170 17 C -0.115 4.115 18 H 0.111 0.889 19 C -0.135 4.135 20 C -0.172 4.172 21 C -0.180 4.180 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.006 1.006 25 H 0.057 0.943 26 H 0.018 0.982 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -21.719 -1.291 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.332 5.332 12 C -0.066 4.066 13 C -0.110 4.110 14 C -0.168 4.168 15 H 0.126 0.874 16 C -0.207 4.207 17 C -0.133 4.133 18 H 0.129 0.871 19 C -0.153 4.153 20 C -0.209 4.209 21 C -0.217 4.217 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.605 -21.622 -0.598 21.928 hybrid contribution 0.379 1.109 -0.878 1.464 sum 3.983 -20.513 -1.476 20.948 Atomic orbital electron populations 1.70112 1.07862 1.27864 1.51358 1.26008 0.95808 1.03476 0.94552 0.85391 0.78612 0.78133 0.78556 1.19633 1.20627 1.18700 1.21625 0.93561 0.92272 1.51051 0.92129 1.18932 0.94324 0.92352 0.95049 1.21780 0.95607 0.88515 0.98669 1.60493 1.20633 1.02025 1.50061 1.21970 0.94456 0.89982 1.00147 1.20976 0.96844 0.91204 1.01967 1.22301 1.00497 0.90573 1.03449 0.87410 1.23157 1.02937 1.03221 0.91361 1.21840 0.93168 0.97226 1.01024 0.87071 1.21722 0.93474 0.98514 1.01593 1.23012 1.02731 0.93308 1.01883 1.22996 1.02851 1.04155 0.91713 0.92684 0.99014 0.98769 0.92489 0.96336 0.84439 0.91605 0.95376 0.91850 0.91963 0.89130 0.87671 0.88650 0.88348 0.88051 0.88390 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.70 5.23 29.85 0.16 1.86 16 10 C 0.08 3.65 5.62 86.30 0.49 4.14 16 11 N -0.70 -25.99 6.50 -513.88 -3.34 -29.33 16 12 C 0.06 1.85 5.64 86.30 0.49 2.34 16 13 C -0.07 -1.74 4.56 30.60 0.14 -1.60 16 14 C -0.15 -2.95 5.73 -10.80 -0.06 -3.01 16 15 H 0.11 2.02 8.08 -2.38 -0.02 2.01 16 16 C -0.17 -2.99 9.90 30.59 0.30 -2.69 16 17 C -0.11 -1.98 5.85 -10.79 -0.06 -2.05 16 18 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 19 C -0.13 -2.40 5.10 -10.79 -0.06 -2.46 16 20 C -0.17 -2.55 10.25 30.61 0.31 -2.24 16 21 C -0.18 -2.90 10.25 30.61 0.31 -2.58 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 26 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.34 12.14 8.73 -89.69 -0.78 11.35 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.53 8.02 -2.39 -0.02 1.51 16 31 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 32 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.92 7.35 -2.39 -0.02 1.90 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -63.97 314.95 1.90 -62.07 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.22 Total: 17.54 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 2.71 Total: -39.59 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -3.06 Total: -86.85 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.97 1.90 -62.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712648651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.965 kcal (2) G-P(sol) polarization free energy of solvation -63.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds