Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47420 * 239.99758 * 3 2 1 5 5 H 1.48499 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47011 * 119.99714 * 3 2 1 7 7 C 1.37881 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.45665 * 180.02562 * 10 9 7 12 12 C 1.52949 * 109.47552 * 300.04043 * 11 10 9 13 13 C 1.53078 * 109.48787 * 299.79017 * 12 11 10 14 14 C 1.53045 * 109.25830 * 297.78362 * 13 12 11 15 15 N 1.46846 * 109.52095 * 300.87288 * 14 13 12 16 16 C 1.46851 * 111.23258 * 61.72127 * 15 14 13 17 17 C 1.53049 * 109.51137 * 298.27118 * 16 15 14 18 18 C 1.52938 * 109.56429 * 59.92408 * 12 11 10 19 19 C 1.53005 * 109.47220 * 300.00607 * 9 7 2 20 20 H 0.96996 * 119.99819 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46535 * 59.99925 * 9 7 2 22 22 H 1.09002 * 109.47501 * 60.03909 * 10 9 7 23 23 H 1.09001 * 109.47379 * 300.03551 * 10 9 7 24 24 H 1.09001 * 109.46315 * 60.04258 * 11 10 9 25 25 H 1.08998 * 109.46672 * 180.02562 * 11 10 9 26 26 H 1.09010 * 109.50788 * 57.71523 * 13 12 11 27 27 H 1.08999 * 109.50871 * 177.84174 * 13 12 11 28 28 H 1.08999 * 109.46533 * 180.86642 * 14 13 12 29 29 H 1.08998 * 109.46513 * 60.88771 * 14 13 12 30 30 H 1.00902 * 110.99944 * 297.60023 * 15 14 13 31 31 H 1.09000 * 109.46468 * 178.25917 * 16 15 14 32 32 H 1.08997 * 109.46486 * 58.28024 * 16 15 14 33 33 H 1.09005 * 109.50853 * 299.20580 * 17 16 15 34 34 H 1.09003 * 109.50720 * 179.07771 * 17 16 15 35 35 H 1.09005 * 109.46883 * 60.10792 * 18 12 11 36 36 H 1.09000 * 109.47081 * 180.09340 * 18 12 11 37 37 H 1.09001 * 109.47117 * 59.98104 * 19 9 7 38 38 H 1.09002 * 109.46804 * 299.98593 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4799 -4.9871 -0.0001 12 6 0.5993 -5.0679 1.2478 13 6 1.4783 -4.9923 2.4988 14 6 2.4295 -6.1911 2.5206 15 7 1.6504 -7.4358 2.5210 16 6 0.8338 -7.5524 1.3060 17 6 -0.1650 -6.3942 1.2483 18 6 -0.3940 -3.9050 1.2500 19 6 0.3707 -2.5800 1.2494 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 2.8715 -3.6049 0.8909 23 1 2.8724 -3.6041 -0.8891 24 1 0.8541 -5.0446 -0.8908 25 1 2.1881 -5.8157 0.0003 26 1 2.0571 -4.0687 2.4818 27 1 0.8482 -5.0113 3.3881 28 1 3.0466 -6.1488 3.4182 29 1 3.0692 -6.1632 1.6385 30 1 1.0781 -7.5039 3.3492 31 1 0.2925 -8.4983 1.3215 32 1 1.4804 -7.5183 0.4292 33 1 -0.8213 -6.4358 2.1176 34 1 -0.7600 -6.4716 0.3383 35 1 -1.0219 -3.9620 0.3608 36 1 -1.0195 -3.9631 2.1407 37 1 -0.3373 -1.7513 1.2490 38 1 0.9970 -2.5222 2.1397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714054592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = -48.669493 kcal Electronic energy + Delta-G solvation = -16507.536916 eV Core-core repulsion = 14154.313293 eV Total energy + Delta-G solvation = -2353.223623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28199 -37.50840 -34.76136 -32.50640 -31.61400 -31.29596 -28.24856 -25.74262 -23.90023 -23.79933 -22.58678 -21.04789 -19.11196 -18.39141 -17.08835 -16.52741 -15.67637 -15.43371 -15.20125 -15.15741 -14.68925 -14.33001 -14.07624 -13.83488 -13.14402 -12.96545 -12.83327 -12.75872 -12.61702 -12.39870 -12.19032 -12.05971 -11.82947 -11.58831 -11.42888 -11.25032 -10.89255 -10.57107 -10.38546 -10.31755 -9.18568 -8.07545 -6.22193 1.39101 1.40188 1.47877 2.42254 3.17900 3.49326 3.78212 3.81678 4.01194 4.29298 4.31403 4.46934 4.53661 4.59783 4.67256 4.70791 4.80839 4.89516 4.94878 4.99284 5.01578 5.08441 5.10237 5.18449 5.22905 5.26675 5.43858 5.47991 5.51359 5.57115 5.66632 5.77375 6.05852 6.16420 6.23802 6.42615 6.58875 6.91385 7.45792 8.95663 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.052933 B = 0.007399 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.840436 B = 3783.402958 C = 3931.444189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.049 3.951 10 C -0.101 4.101 11 C -0.099 4.099 12 C -0.047 4.047 13 C -0.142 4.142 14 C 0.061 3.939 15 N -0.685 5.685 16 C 0.059 3.941 17 C -0.140 4.140 18 C -0.099 4.099 19 C -0.099 4.099 20 H 0.259 0.741 21 H -0.016 1.016 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.345 0.655 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -13.100 4.618 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.030 3.970 10 C -0.139 4.139 11 C -0.136 4.136 12 C -0.047 4.047 13 C -0.181 4.181 14 C -0.068 4.068 15 N -0.313 5.313 16 C -0.070 4.070 17 C -0.179 4.179 18 C -0.137 4.137 19 C -0.137 4.137 20 H 0.068 0.932 21 H 0.002 0.998 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.430 -13.379 4.363 14.145 hybrid contribution -0.585 2.239 -0.089 2.315 sum 0.846 -11.140 4.274 11.962 Atomic orbital electron populations 1.70031 1.07165 1.26979 1.51560 1.25748 0.95655 1.02328 0.94968 0.85731 0.78491 0.79342 0.78822 1.19738 1.20945 1.19618 1.21645 0.92959 0.92586 1.50277 0.93261 1.18580 0.93018 0.92255 0.93126 1.21521 0.97875 0.94814 0.99685 1.21589 0.98185 0.96958 0.96881 1.20403 0.94921 0.94252 0.95108 1.22291 0.98798 1.00157 0.96898 1.21995 0.95543 0.86722 1.02567 1.60727 1.29661 1.35636 1.05286 1.22056 0.94233 0.97255 0.93475 1.22270 0.98595 0.94775 1.02288 1.21553 0.97232 0.95273 0.99628 1.21378 0.98619 0.95930 0.97732 0.93189 0.99751 0.92938 0.94438 0.93624 0.90893 0.92435 0.92269 0.90095 0.91351 0.83762 0.89318 0.91222 0.91703 0.91723 0.94311 0.93104 0.93158 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.49 2.10 -11.54 -0.02 2.47 16 10 C -0.10 -4.23 4.87 30.60 0.15 -4.08 16 11 C -0.10 -3.34 4.14 30.58 0.13 -3.22 16 12 C -0.05 -1.46 0.51 -52.17 -0.03 -1.49 16 13 C -0.14 -4.16 4.17 30.64 0.13 -4.04 16 14 C 0.06 1.49 6.31 86.33 0.54 2.04 16 15 N -0.68 -14.74 6.86 -513.97 -3.53 -18.27 16 16 C 0.06 1.26 6.31 86.33 0.54 1.80 16 17 C -0.14 -3.46 4.87 30.63 0.15 -3.31 16 18 C -0.10 -3.82 4.73 30.57 0.14 -3.68 16 19 C -0.10 -4.74 4.71 30.59 0.14 -4.59 16 20 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 21 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 22 H 0.05 2.14 6.39 -2.39 -0.02 2.13 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 2.14 4.91 -2.39 -0.01 2.13 16 26 H 0.06 1.99 4.84 -2.38 -0.01 1.98 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.78 6.51 -2.39 -0.02 1.76 16 30 H 0.34 6.49 8.86 -89.69 -0.79 5.70 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.57 6.51 -2.39 -0.02 1.56 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 2.79 6.07 -2.39 -0.01 2.77 16 38 H 0.03 1.45 6.50 -2.39 -0.02 1.44 16 Total: -1.00 -60.66 273.68 1.53 -59.14 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.24 Total: 13.94 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 2.55 Total: -47.20 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -3.29 Total: -72.43 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.66 1.53 -59.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714054592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.466 kcal (2) G-P(sol) polarization free energy of solvation -60.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds