Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48501 * 109.47362 * 269.99627 * 3 2 1 5 5 H 1.48506 * 109.47303 * 30.00171 * 3 2 1 6 6 H 1.48507 * 109.47397 * 150.00111 * 3 2 1 7 7 C 1.37876 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99876 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00151 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.30841 * 32.95782 * 11 10 9 13 13 C 1.54908 * 110.27595 * 270.90611 * 11 10 9 14 14 C 1.55307 * 106.38054 * 244.48781 * 13 11 10 15 15 C 1.53271 * 102.93998 * 23.95442 * 14 13 11 16 16 H 1.09002 * 111.05650 * 75.94923 * 15 14 13 17 17 C 1.51777 * 115.79958 * 202.84921 * 15 14 13 18 18 C 1.53740 * 107.24925 * 177.05653 * 17 15 14 19 19 C 1.52563 * 111.49775 * 302.18421 * 18 17 15 20 20 C 1.53764 * 111.45403 * 54.78467 * 19 18 17 21 21 C 1.51616 * 107.26274 * 302.50564 * 20 19 18 22 22 H 1.08997 * 109.76660 * 305.24640 * 21 20 19 23 23 H 0.97000 * 120.00291 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46906 * 59.99999 * 9 7 2 25 25 H 1.09000 * 109.47675 * 300.00039 * 9 7 2 26 26 H 1.00909 * 110.99594 * 56.05112 * 10 9 7 27 27 H 1.09005 * 110.07213 * 125.25887 * 13 11 10 28 28 H 1.09002 * 110.07312 * 3.71913 * 13 11 10 29 29 H 1.09003 * 110.72356 * 265.59636 * 14 13 11 30 30 H 1.08997 * 110.87509 * 142.38715 * 14 13 11 31 31 H 1.08994 * 109.90178 * 57.62033 * 17 15 14 32 32 H 1.08999 * 109.96543 * 296.52795 * 17 15 14 33 33 H 1.09005 * 109.07292 * 181.66920 * 18 17 15 34 34 H 1.08996 * 109.07302 * 62.70412 * 18 17 15 35 35 H 1.08999 * 109.08484 * 294.27611 * 19 18 17 36 36 H 1.09002 * 109.08494 * 175.29426 * 19 18 17 37 37 H 1.08996 * 109.89939 * 183.07123 * 20 19 18 38 38 H 1.09000 * 109.90014 * 61.94850 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5056 -4.9070 0.0011 12 1 0.5710 -4.8309 -0.5547 13 6 1.2300 -5.3676 1.4543 14 6 2.0501 -6.6696 1.6641 15 6 3.1682 -6.5424 0.6234 16 1 3.9264 -5.8300 0.9484 17 6 3.8175 -7.8437 0.1891 18 6 4.8466 -7.4985 -0.8997 19 6 4.1947 -6.7817 -2.0781 20 6 3.4220 -5.5338 -1.6196 21 6 2.3933 -5.9898 -0.6034 22 1 1.7741 -6.7770 -1.0334 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8406 -3.5485 0.7820 27 1 0.1671 -5.5693 1.5876 28 1 1.5570 -4.6019 2.1578 29 1 1.4365 -7.5483 1.4653 30 1 2.4639 -6.7099 2.6717 31 1 3.0626 -8.5184 -0.2145 32 1 4.3175 -8.3114 1.0372 33 1 5.3112 -8.4183 -1.2551 34 1 5.6152 -6.8547 -0.4720 35 1 3.5056 -7.4652 -2.5741 36 1 4.9682 -6.4820 -2.7852 37 1 2.9225 -5.0729 -2.4717 38 1 4.1070 -4.8213 -1.1601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714302014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -34.544041 kcal Electronic energy + Delta-G solvation = -15890.847484 eV Core-core repulsion = 13538.236387 eV Total energy + Delta-G solvation = -2352.611097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72582 -35.56834 -33.47345 -32.07692 -30.47332 -28.13207 -26.93673 -24.82651 -22.20525 -21.61659 -20.59825 -20.02710 -18.85758 -16.37647 -15.21249 -14.82453 -14.57743 -14.31509 -13.82017 -13.53625 -13.28513 -12.96745 -12.75371 -12.28622 -11.87837 -11.56456 -11.33752 -11.21431 -10.86967 -10.79344 -10.56332 -10.51607 -10.41478 -10.33762 -10.13150 -9.93154 -9.75366 -9.43959 -9.06168 -8.44653 -7.14983 -5.99905 -4.01492 3.33848 3.39503 3.43258 4.45740 4.69522 4.88097 4.91724 5.18434 5.32711 5.36072 5.39379 5.49489 5.63642 5.68084 5.77329 5.78989 5.84270 5.93792 6.01802 6.08241 6.15479 6.22027 6.28090 6.32765 6.35910 6.43184 6.60360 6.64769 6.72735 6.82688 7.00840 7.34459 7.50830 7.83929 8.19358 8.48657 8.70230 9.08709 9.63384 11.11167 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038789 B = 0.006471 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.681245 B = 4325.633003 C = 4698.953535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.676 5.676 11 C 0.088 3.912 12 H 0.069 0.931 13 C -0.151 4.151 14 C -0.114 4.114 15 C -0.097 4.097 16 H 0.076 0.924 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.077 4.077 22 H 0.060 0.940 23 H 0.260 0.740 24 H 0.025 0.975 25 H -0.015 1.015 26 H 0.327 0.673 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -14.739 0.352 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.305 5.305 11 C -0.023 4.023 12 H 0.087 0.913 13 C -0.191 4.191 14 C -0.151 4.151 15 C -0.116 4.116 16 H 0.094 0.906 17 C -0.144 4.144 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.128 4.128 21 C -0.096 4.096 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.003 0.997 26 H 0.144 0.856 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.001 -14.586 -0.351 15.776 hybrid contribution -0.077 0.924 0.947 1.325 sum 5.925 -13.662 0.596 14.903 Atomic orbital electron populations 1.69964 1.06071 1.26675 1.51129 1.24985 0.94847 0.99307 0.95461 0.86512 0.79690 0.83162 0.78098 1.20651 1.21359 1.19897 1.21209 0.93471 0.90371 1.50018 0.92065 1.19556 0.90678 0.87467 0.95561 1.60739 1.20422 1.00802 1.48582 1.21939 0.96267 0.90855 0.93281 0.91261 1.23308 0.99597 0.97221 0.98941 1.22143 0.96946 0.97695 0.98344 1.21899 0.96941 0.96968 0.95742 0.90564 1.21398 0.98172 0.97091 0.97736 1.21516 0.98087 0.99568 0.96184 1.21630 0.99311 0.97757 0.97188 1.21102 0.97329 0.95809 0.98521 1.21647 0.95958 0.96843 0.95174 0.92137 0.92992 0.95644 0.99733 0.85560 0.92463 0.91687 0.92152 0.92414 0.92260 0.92591 0.92934 0.92317 0.92963 0.92657 0.92047 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.11 5.29 -4.98 -0.03 5.08 16 10 N -0.68 -14.32 5.19 -107.19 -0.56 -14.87 16 11 C 0.09 1.57 3.11 -66.95 -0.21 1.36 16 12 H 0.07 1.33 7.82 -51.93 -0.41 0.93 16 13 C -0.15 -2.41 6.51 -24.50 -0.16 -2.56 16 14 C -0.11 -1.49 6.45 -25.37 -0.16 -1.65 16 15 C -0.10 -1.28 2.37 -89.89 -0.21 -1.50 16 16 H 0.08 1.09 8.05 -51.93 -0.42 0.68 16 17 C -0.11 -1.20 5.66 -26.97 -0.15 -1.35 16 18 C -0.12 -1.29 5.84 -26.57 -0.16 -1.45 16 19 C -0.12 -1.48 5.84 -26.56 -0.16 -1.64 16 20 C -0.09 -1.35 5.04 -27.03 -0.14 -1.49 16 21 C -0.08 -1.15 2.16 -90.37 -0.20 -1.35 16 22 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 25 H -0.02 -0.42 8.14 -51.93 -0.42 -0.85 16 26 H 0.33 6.77 8.18 -39.29 -0.32 6.45 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -28.98 293.36 -9.37 -38.34 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.96 Total: 1.62 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.98 Total: -19.98 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.18 Total: -41.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.98 -9.37 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714302014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.797 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds